Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j08
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    31   0.18 
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.32 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.2  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   9.2  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 9   AGANGIAAPHYGQQLMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVS 185
           A A   A PH   Q  +   TP+T  +    +++   +ST+ S +NA      T+P  S
Sbjct: 134 ASAKHSAVPHRSSQFQSTTLTPSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASS 192


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +3

Query: 66  NTPATPPNF-PDALAAFSRLSTTGSPNNAGGVCMNTAPPVS 185
           ++P  PP+F  DA+++FS L T  S NN GG   +TAP V+
Sbjct: 428 DSPRVPPSFSDDAVSSFS-LVTAPSINNVGG---STAPSVN 464


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 551  LRCIIHYNCT*TDKTFRILFNMIDYSTVP*IMFCK*SLQ*GLID 420
            L+ ++H +C   D  F    N++DYS +  I + K  L  G+ID
Sbjct: 1827 LKSLLH-SCLWNDTLFLSKLNIMDYSLIVGIDYTKKELYVGIID 1869


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 193 ASGDTGGAVFIQTPPALLGLPVVDSRENAANASGKFG 83
           ++G  GG+ F Q  PA  G     +  N    +G FG
Sbjct: 319 STGLFGGSTFNQQKPAFSGFGSTTNTTNTGTGTGLFG 355


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 87  NFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLAT 197
           N   A   F  L +TGS N+ G    NTA   +  AT
Sbjct: 97  NTAGAKPLFGGLGSTGSANSTGDKSKNTASSATGAAT 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,307
Number of Sequences: 5004
Number of extensions: 62709
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)