Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j08
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0281 - 14570635-14574633                                         29   3.1  
11_04_0167 + 14382976-14385244,14389373-14389842                       29   5.4  
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466...    29   5.4  
05_07_0108 + 27735783-27736205                                         28   7.2  
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    28   7.2  
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273...    28   9.5  

>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 149  WWSLYEYRSTCVSTRYASSASISPISCTNQHVSGFCKHTNK 271
            W S+  Y +T    R   +AS S + C  Q VSG  + ++K
Sbjct: 955  WLSIARYMATLSDVRLTIAASSSQVQCAIQQVSGTEEFSHK 995


>11_04_0167 + 14382976-14385244,14389373-14389842
          Length = 912

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 51  LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAG-GVCMNTAPPVSPLAT 197
           LM+  N   +  NF     AF+ +   G   ++G G C+NT  P SPL T
Sbjct: 281 LMSLKNVSLSNNNFQGPKPAFAAIP--GQDEDSGNGFCLNTPGPCSPLTT 328


>09_04_0574 +
           18645363-18645870,18645995-18646491,18646631-18646696,
           18646921-18646989,18647401-18647466
          Length = 401

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +3

Query: 48  QLMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSH 227
           QL      P +P +  D + A       G  N       + APP   +A+H     +QSH
Sbjct: 59  QLQLQQQRPGSPDHAADTVLARFLAGHGGHDNKPPRPAAHFAPPEDSMASHQQQLMYQSH 118

Query: 228 VQ 233
            Q
Sbjct: 119 QQ 120


>05_07_0108 + 27735783-27736205
          Length = 140

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 99  ALAAFSRLSTTGSPNNAGGVCMN 167
           A  A +  +TTG PN+AGG C++
Sbjct: 4   ASKAVAMTATTGRPNDAGGACVD 26


>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/75 (26%), Positives = 29/75 (38%)
 Frame = +3

Query: 9   AGANGIAAPHYGQQLMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSP 188
           + A G+ AP    Q +   +    PP +  A AA   +    + NNA G       PV+ 
Sbjct: 301 SAAAGVPAPP-APQFVVVGSIWVPPPEYAAAAAAQQHVQLAAAGNNASGSANPVYAPVAM 359

Query: 189 LATHXXXXSHQSHVQ 233
           L       SH+   Q
Sbjct: 360 LPAGLQPHSHRKQHQ 374


>11_04_0195 -
           14725553-14725571,14725988-14726079,14727214-14727335,
           14727588-14727597,14727798-14727896,14728046-14728612
          Length = 302

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
 Frame = +3

Query: 72  PATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATH-------XXXXSHQSHV 230
           P  PP    A +     ++T + + AG VC +  P  SP+++            +H S +
Sbjct: 107 PEPPPEPTSAPSPLPEPNSTSASDGAGVVCPSARPTASPISSSISARRIPSLLCNHDSGL 166

Query: 231 QINMY---PGSANTPTNYTSISCSTAM 302
             ++Y   P   +TP +  S+  S +M
Sbjct: 167 ASSVYHAPPPPRSTPMDLLSVMQSQSM 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,372,600
Number of Sequences: 37544
Number of extensions: 391416
Number of successful extensions: 922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)