Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j08
         (776 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4663|AAF57085.1| 1105|Drosophila melanogaster CG12072-P...    31   2.3  
AY069492-1|AAL39637.1|  449|Drosophila melanogaster LD22082p pro...    29   7.1  
AE014134-1435|AAF52625.2|  449|Drosophila melanogaster CG8282-PA...    29   7.1  
M21329-1|AAA28608.1|  916|Drosophila melanogaster protein ( D.me...    29   9.4  
AE014297-3375|AAS65198.1|  920|Drosophila melanogaster CG10367-P...    29   9.4  
AE014297-3374|AAF56175.1|  920|Drosophila melanogaster CG10367-P...    29   9.4  

>AE014297-4663|AAF57085.1| 1105|Drosophila melanogaster CG12072-PA
           protein.
          Length = 1105

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
 Frame = +3

Query: 6   PAGANGIAAPHYGQQLMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVS 185
           P+G + +A P    +  T C+    PP  P    A+ +  +    N    +   T    S
Sbjct: 187 PSGFSEVAPPAPPPRNPTACSAATPPPPVPPTSQAYVKRRSPALNNRPPAIAPPTQRGNS 246

Query: 186 PLATHXXXXSHQSHV-----QINMYPGSAN 260
           P+ T     + Q  +      +N+YPG  +
Sbjct: 247 PVITQNGLKNPQQQLTQQLKSLNLYPGGGS 276


>AY069492-1|AAL39637.1|  449|Drosophila melanogaster LD22082p
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 135 SPNNAGGVCMNTAPPVSPLATHXXXXSHQSHVQINMYPGSANTPTNYTSISCSTAMCSEH 314
           SP+   G  M  A P +PLAT        +        GSA +P + +S   + A+  E+
Sbjct: 13  SPSTNNGATMEIASPTNPLATPPATGGAPAPSGATNGSGSATSPDSSSSAPATPAVLGEN 72


>AE014134-1435|AAF52625.2|  449|Drosophila melanogaster CG8282-PA
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 135 SPNNAGGVCMNTAPPVSPLATHXXXXSHQSHVQINMYPGSANTPTNYTSISCSTAMCSEH 314
           SP+   G  M  A P +PLAT        +        GSA +P + +S   + A+  E+
Sbjct: 13  SPSTNNGATMEIASPTNPLATPPATGGAPAPSGATNGSGSATSPDSSSSAPATPAVLGEN 72


>M21329-1|AAA28608.1|  916|Drosophila melanogaster protein (
           D.melanogaster 3-hydroxy-3-methyglutaryl coenzyme A
           reductase (HMG CoA) gene, completecds. ).
          Length = 916

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 213 SHQSHVQINMYPGSANTPTNYTSISCST 296
           SH  H + ++   SAN P N T  SCST
Sbjct: 887 SHMRHNRSSIAVNSANNPLNVTVSSCST 914


>AE014297-3375|AAS65198.1|  920|Drosophila melanogaster CG10367-PB,
           isoform B protein.
          Length = 920

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 213 SHQSHVQINMYPGSANTPTNYTSISCST 296
           SH  H + ++   SAN P N T  SCST
Sbjct: 891 SHMRHNRSSIAVNSANNPLNVTVSSCST 918


>AE014297-3374|AAF56175.1|  920|Drosophila melanogaster CG10367-PA,
           isoform A protein.
          Length = 920

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 213 SHQSHVQINMYPGSANTPTNYTSISCST 296
           SH  H + ++   SAN P N T  SCST
Sbjct: 891 SHMRHNRSSIAVNSANNPLNVTVSSCST 918


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,912,639
Number of Sequences: 53049
Number of extensions: 731871
Number of successful extensions: 2013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2013
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)