Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4j08
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 32 0.53
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 32 0.53
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 32 0.53
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 32 0.53
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 32 0.53
Z82284-7|CAE11307.1| 343|Caenorhabditis elegans Hypothetical pr... 31 1.2
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 29 2.8
AF025463-3|AAB71009.2| 403|Caenorhabditis elegans Hypothetical ... 29 3.7
AC025726-4|AAK73922.1| 198|Caenorhabditis elegans Prion-like-(q... 28 6.5
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/89 (28%), Positives = 41/89 (46%)
Frame = +3
Query: 51 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 230
LM +P P +FP + + TT S NN GG +P S L T Q +
Sbjct: 185 LMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 239
Query: 231 QINMYPGSANTPTNYTSISCSTAMCSEHM 317
+ + P + +TPT++ + TA+ ++ M
Sbjct: 240 RSFLNPDNLSTPTSF-GVPSETALDADKM 267
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/89 (28%), Positives = 41/89 (46%)
Frame = +3
Query: 51 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 230
LM +P P +FP + + TT S NN GG +P S L T Q +
Sbjct: 29 LMPTFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 83
Query: 231 QINMYPGSANTPTNYTSISCSTAMCSEHM 317
+ + P + +TPT++ + TA+ ++ M
Sbjct: 84 RSFLNPDNLSTPTSF-GVPSETALDADKM 111
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/89 (28%), Positives = 41/89 (46%)
Frame = +3
Query: 51 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 230
LM +P P +FP + + TT S NN GG +P S L T Q +
Sbjct: 185 LMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 239
Query: 231 QINMYPGSANTPTNYTSISCSTAMCSEHM 317
+ + P + +TPT++ + TA+ ++ M
Sbjct: 240 RSFLNPDNLSTPTSF-GVPSETALDADKM 267
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/89 (28%), Positives = 41/89 (46%)
Frame = +3
Query: 51 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 230
LM +P P +FP + + TT S NN GG +P S L T Q +
Sbjct: 35 LMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 89
Query: 231 QINMYPGSANTPTNYTSISCSTAMCSEHM 317
+ + P + +TPT++ + TA+ ++ M
Sbjct: 90 RSFLNPDNLSTPTSF-GVPSETALDADKM 117
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/89 (28%), Positives = 41/89 (46%)
Frame = +3
Query: 51 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 230
LM +P P +FP + + TT S NN GG +P S L T Q +
Sbjct: 185 LMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 239
Query: 231 QINMYPGSANTPTNYTSISCSTAMCSEHM 317
+ + P + +TPT++ + TA+ ++ M
Sbjct: 240 RSFLNPDNLSTPTSF-GVPSETALDADKM 267
>Z82284-7|CAE11307.1| 343|Caenorhabditis elegans Hypothetical
protein T27E7.8 protein.
Length = 343
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -1
Query: 602 SNKIKNYDQKN*HNLYILRCIIH 534
SN+ K YDQ N +NLYIL IIH
Sbjct: 280 SNERKEYDQMN-NNLYILSAIIH 301
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 57 TPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNT 170
T TP TP P + +A SR + G P NA + +T
Sbjct: 70 TASKTPKTPSKTPSSASARSRSRSRGRPTNASRLSAST 107
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +3
Query: 9 AGANGIAAPHYGQQLMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGG 155
AGANG+ + G+ PCN PP P G N GG
Sbjct: 279 AGANGLPG-NSGKPTKRPCNPVTKPPCVPCPQGPLGPAGPAGPQGNLGG 326
>AF025463-3|AAB71009.2| 403|Caenorhabditis elegans Hypothetical
protein K10B4.4 protein.
Length = 403
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 146 CWWSLYEYRSTCVSTRYASSASISP----ISCTNQHVSGFCKHTNKLHIYLLLN 295
CW + R V T ++ + +ISP +S ++SGFC ++N +L N
Sbjct: 283 CWLPFHIQRLLSVYTTWSETTTISPPVQFLSMIVFYISGFCYYSNSAANPILYN 336
>AC025726-4|AAK73922.1| 198|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 88
protein.
Length = 198
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 15 ANGIAAPHYGQQLMTPCNTPATPPNFPD 98
A+ + A + Q++ P TP PPNFPD
Sbjct: 8 ASSLIAATWSQRV-PPSTTPVPPPNFPD 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,593
Number of Sequences: 27780
Number of extensions: 376881
Number of successful extensions: 844
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -