Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j08
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.19 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.19 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 78  TPPNFPDALAAFSRLSTTGSPNNA--GGVCMNTAPPVSPLATH 200
           TP  F    A+   LS +   + A  GG C+   PP+ PL  H
Sbjct: 405 TPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLH 447


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 78  TPPNFPDALAAFSRLSTTGSPNNA--GGVCMNTAPPVSPLATH 200
           TP  F    A+   LS +   + A  GG C+   PP+ PL  H
Sbjct: 405 TPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLH 447


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 97  MHWQHSHGCPQQG 135
           MH QH H  PQQG
Sbjct: 172 MHTQHPHMQPQQG 184


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 219 QSHVQINMYPGSANTPTNYTSISC 290
           ++ + +  Y G ++TP+  +S SC
Sbjct: 305 RNDLDLEKYEGISSTPSQASSCSC 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,554
Number of Sequences: 438
Number of extensions: 4851
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)