Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j07
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    29   0.86 
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    27   2.6  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    26   4.6  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 340 CEQWGKHVSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 188
           CE +G +V  A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLYV--AFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 479 YVLEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKY 598
           ++LEQ   Q++   +D  + LK  + K  V +H+D  + Y
Sbjct: 11  HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTY 50


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 239 ETRVETVPQQRRGLLHGFRAHQARARDVLAPLLAKLIRSV 358
           E R+E V +Q R L  G   + +   DVLAPL +   +++
Sbjct: 201 ERRLEEVEKQLRSLDEGMEDYLSLETDVLAPLCSDSSKAI 240


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 542 KYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDP 667
           KY  CK  +S     +Y   + +S   +P +AP+ + +   P
Sbjct: 172 KYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPP 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,339
Number of Sequences: 5004
Number of extensions: 51442
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)