Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j07
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524...    29   2.7  
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    29   4.8  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    29   4.8  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   6.3  
07_03_0349 - 17051786-17052376                                         28   8.4  
06_01_0806 - 6048042-6048138,6048461-6048550,6049362-6049425,604...    28   8.4  
05_01_0051 - 345125-345693,345833-346925                               28   8.4  
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    28   8.4  

>06_01_0719 +
           5239238-5239635,5239735-5239945,5240379-5240454,
           5240573-5240675,5241089-5241157,5241318-5241354,
           5241445-5241519,5241598-5241649,5241752-5241796,
           5241994-5242080,5242348-5242445
          Length = 416

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 521 KDIASSLKYGNCKDAVSRHVDKKY 592
           K +A S+  GN KD VSR +DK Y
Sbjct: 136 KTLAESMALGNIKDYVSRPMDKPY 159


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 218 VVHGGLGLQHVPH 180
           VV GGLG QH+PH
Sbjct: 241 VVQGGLGFQHIPH 253


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -3

Query: 650 PRCLEPRAVVSPPTRCTYICIFYPRVCLQRLYNFHILNCWRC 525
           P C +P   +        IC F+P   + ++ N   + CW C
Sbjct: 408 PNCRQPNPKIVEDNFSHIICTFHPFAVIWQMGNNSHMFCWAC 449


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 523 LGHKLDLRVSLLE-HVPQRKRVLAEFELPDFNLS 425
           L  KL+     LE H+P R+  + +F+LP F +S
Sbjct: 329 LAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKIS 362


>07_03_0349 - 17051786-17052376
          Length = 196

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 650 PRCLEPRAVVSPPTRCTYICIFYPRVCLQR 561
           P CL  R +V PPTR  Y      R+ L R
Sbjct: 42  PACLRRRRLVLPPTRLAYYAAAVGRLRLHR 71


>06_01_0806 -
           6048042-6048138,6048461-6048550,6049362-6049425,
           6049504-6049552,6050403-6050459,6050953-6051024,
           6051912-6052003,6052542-6052614,6052686-6052748,
           6052837-6052901,6053803-6053890,6053974-6054015,
           6054097-6054188,6054601-6054688,6055134-6055225,
           6055368-6055419
          Length = 391

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 557 KDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITK 703
           +D    HVDKK  +T +  G ++     +  A+   P  +QP  V++ +
Sbjct: 258 RDGADIHVDKKISFTQAMLGGKVEVPTLDGTAEVKIPKGVQPGQVIVLR 306


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 60  HFYAATTLLYAERNLF 107
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 132 TRRLVSLNCGRADDDQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDF 293
           T R +S    RA  D +R++L    ++H  ++EKL K  L       E+YC  F
Sbjct: 264 THRPLSEMMIRAATDDVRFLL----SIHEKMMEKLSKVSLWRLSVRSELYCRCF 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,299,730
Number of Sequences: 37544
Number of extensions: 366872
Number of successful extensions: 1195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)