Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4j07
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-8|CAA98451.1| 372|Caenorhabditis elegans Hypothetical pr... 30 1.9
U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical pr... 29 2.5
EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short i... 29 2.5
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 29 2.5
AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular... 29 2.5
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 29 2.5
AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhes... 29 2.5
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 29 2.5
Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical p... 29 4.3
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 29 4.3
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z82274-5|CAB05227.1| 333|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 27 9.9
>Z74031-8|CAA98451.1| 372|Caenorhabditis elegans Hypothetical
protein F32D8.8 protein.
Length = 372
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = -1
Query: 235 SFSSSVWCTVGSVCSTYRIWSSSARPQFRETSRRVKFVVWPILNRFLSAYSSVVAA*KWP 56
++S+ V+ T + CS + + + +R SRR K W IL+ ++ S ++ A +
Sbjct: 126 NYSTLVYVTSTNKCSDLKYYFQN----YRNNSRRQKPAKWDILSELMTWNSEILGALSFS 181
Query: 55 STGAELNFTV 26
G L++ +
Sbjct: 182 FDGVSLHYAM 191
>U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical
protein F07C4.6 protein.
Length = 204
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 507 TCGFPC-SSTYLSVNVSWPNLNCPILT*AILI 415
TCG C +STY N +P LNC +T A+ +
Sbjct: 104 TCGLCCQTSTYSCQNAPFPRLNCASVTKAMCL 135
>Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical
protein C17G1.6b protein.
Length = 685
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 554 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 676
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical
protein C17G1.6a protein.
Length = 765
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 554 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 676
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short
isoform protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 580 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 470
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
isoform protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 580 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 470
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular
matrix metalloproteaseprotein.
Length = 685
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 554 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 676
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 580 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 470
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform b protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 580 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 470
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 580 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 470
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical
protein T06C12.14 protein.
Length = 245
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 504 CGFPC-SSTYLSVNVSWPNLNCPILT 430
CG C +S+Y NV++P LNC +T
Sbjct: 105 CGLCCQTSSYSCPNVAFPRLNCATIT 130
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 581 PRVCLQRLYNFHILNCW 531
PR+C +LYN IL CW
Sbjct: 722 PRMCPSKLYNEQILPCW 738
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 581 PRVCLQRLYNFHILNCW 531
PR+C +LYN IL CW
Sbjct: 752 PRMCPSKLYNEQILPCW 768
>Z82274-5|CAB05227.1| 333|Caenorhabditis elegans Hypothetical
protein JC8.7 protein.
Length = 333
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 228 EKLMKQELRPYRN-SGEVYCTDFEHIKRALETC 323
+K K E YR+ S YC + EH+ R+L C
Sbjct: 216 KKNKKNERTGYRDLSKNAYCINIEHLVRSLRLC 248
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 552 FPYFKLLAMSLATNLTCGFPCSSTYLSVNVSW 457
FPY++ L TNLTC +S ++ VNVS+
Sbjct: 241 FPYYEYLCTHYWTNLTC---YTSIFVFVNVSF 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,895,340
Number of Sequences: 27780
Number of extensions: 297922
Number of successful extensions: 934
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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