Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j06
         (235 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   2.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   2.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   3.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   4.0  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    19   7.0  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    19   7.0  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    19   7.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    19   9.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    19   9.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    19   9.3  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 2.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 174 CYYTDNSDYR 145
           CYYT+ S YR
Sbjct: 91  CYYTNWSQYR 100


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 2.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 67  TSFTLQQVNNFFV 29
           T  T+ QVNN+F+
Sbjct: 374 TGLTILQVNNWFI 386


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 99   FCFCVVSHLSDKDDSDGNRYYQYNNNCNFIY 191
            F  CV  HL  ++ + G  Y    + C++ Y
Sbjct: 1221 FYVCVNGHLVPQNCAPGLHYNPEEHMCDWKY 1251


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +3

Query: 114 VSH-LSDKDDSDGN 152
           V H LSD+DD D N
Sbjct: 28  VEHRLSDRDDDDEN 41


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 19.0 bits (37), Expect = 7.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 54  CSRLIIFLSY 25
           CS L++FL+Y
Sbjct: 77  CSVLLVFLTY 86


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 19.0 bits (37), Expect = 7.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 234 FFFTIIWVFIL 202
           F F  +W+FIL
Sbjct: 151 FIFDNVWLFIL 161


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 19.0 bits (37), Expect = 7.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 54  CSRLIIFLSY 25
           CS L++FL+Y
Sbjct: 73  CSVLLVFLTY 82


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 18.6 bits (36), Expect = 9.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 85  NLLIYFVSASC 117
           N+LIY + A C
Sbjct: 4   NMLIYLIVACC 14


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 18.6 bits (36), Expect = 9.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 162 DNSDYRRCRLCRL 124
           D +   +CR CRL
Sbjct: 85  DKTHRNQCRACRL 97


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 18.6 bits (36), Expect = 9.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 162 DNSDYRRCRLCRL 124
           D +   +CR CRL
Sbjct: 85  DKTHRNQCRACRL 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,926
Number of Sequences: 336
Number of extensions: 682
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3320999
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)