Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j06
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   1.8  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    24   2.3  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    24   3.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    23   4.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   4.1  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    23   5.4  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    23   5.4  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   5.4  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    23   7.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    23   7.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    22   9.4  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    22   9.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    22   9.4  

>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 90  QIFSKSLLQVLLCSRLIIFLSYNAII 13
           +IF   ++ VL CSRL+  +S + ++
Sbjct: 406 EIFLNGVVSVLACSRLVFAVSRDGVL 431


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 8   LIIIALYDKKIINLLQSKTCKRLFEKI 88
           ++ I  YD   +  +  KTC++L EKI
Sbjct: 362 IVEICRYDIDSVRSVALKTCEKLMEKI 388


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 180 YNCYYTDNSDYRRCRLCRLDATRRRNK 100
           +N +Y D     R    R++ TRR+NK
Sbjct: 426 FNVFYPDLIGTGRAPTYRIERTRRKNK 452


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 171 YYTDNSDYRRCRLCRLDATRRRNKIN 94
           YY ++ +Y      +LD T R NK N
Sbjct: 571 YYRESKEYIASLYEKLDRTERNNKEN 596


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 2    KLLIIIALYDKKIINLLQSKTCKRLFEKIC 91
            K+ ++  L D K++      TCK L   IC
Sbjct: 1217 KIQLLSELKDMKLLGASDVDTCKSLKRSIC 1246


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 120 HLSDKDDSDGNRYYQYNNNCNFIYI 194
           H    D  +G R+Y+Y+    FIYI
Sbjct: 288 HAFPNDYRNGLRWYEYDPTKIFIYI 312


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 99  FCFCVVSHLSDKD 137
           F  C+++HLSD+D
Sbjct: 320 FLHCLINHLSDED 332


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 156 YYQYNNNCNFIYI 194
           YY Y N CN  YI
Sbjct: 866 YYYYGNECNESYI 878


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 106 KQNKLANFFKKPFTSFT 56
           K NK+  F   PFT F+
Sbjct: 71  KTNKIKEFLNDPFTEFS 87


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 44  NLLQSKTCKRLFEKIC 91
           NLL +  C R+ EK+C
Sbjct: 634 NLLITMNCLRVLEKVC 649


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 162 DNSDYRRCRLCRLDATRRRNKIN*QIFSKSL 70
           DNS + +  L + D ++ +NK   ++F  S+
Sbjct: 558 DNSQHEKYSLAQRDVSKSKNKELKELFKYSM 588


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 32  KKIINLLQSKTCKRL 76
           K+++N+LQ+  C+RL
Sbjct: 756 KEVLNILQTHYCERL 770


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 90   ANLFCFCVVSHLSDKDDSDGNRYYQYNNNCNFIYINV 200
            A ++CF   S        D + Y+     CN +Y NV
Sbjct: 4055 AEIYCFTCSSWKEPCYFDDSDFYFGTKILCNILYRNV 4091


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,789
Number of Sequences: 5004
Number of extensions: 9362
Number of successful extensions: 33
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)