Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4j06
         (235 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    26   3.1  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    26   4.1  
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    26   4.1  
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U41273-4|AAA82456.1|  257|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical ...    25   9.5  
AC006722-17|ABP57812.1|  141|Caenorhabditis elegans Hypothetical...    25   9.5  

>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 90  QIFSKSLLQVLLCSRLIIFLSYNAIIIN 7
           Q F   +L VLLC RL I+ +Y AI  N
Sbjct: 179 QYFIIGVLSVLLCFRLFIWNNYVAIHAN 206


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
           protein C28H8.3 protein.
          Length = 1714

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 165 TDNSDYRRCRLCRLDATRRRNKIN*QIFSKSLLQVLLCSRLIIFLSYNAIII 10
           TDN     C    +D T++   I   + ++S+  VLL S  + F+S  A  I
Sbjct: 225 TDNVTQNVCASQEIDLTKQFETIAFDVLTRSMSVVLLHSIKVNFVSVEAYYI 276


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 171 YYTDNSDYRRCRLCRLDATRRRNKIN*QIFSKSLLQVLLCSRLI 40
           Y++D SD+  C        RRR  +N +    +L+QV  C  +I
Sbjct: 383 YFSDWSDWTPCTKSNERQVRRRRCLNLRKCLGALMQVQNCPEII 426


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = -2

Query: 231 FFTIIWVFILQHLCI*NYNCYYTDNSD--YRRCRLCR----LDATRRRNKI 97
           FF  +++   + +C  N +C+   N +  Y RCR CR    +D    RN I
Sbjct: 44  FFRRMYLLKSKIICGLNNSCFDLKNKNEPYLRCRACRYKKCIDVGMNRNGI 94


>U41273-4|AAA82456.1|  257|Caenorhabditis elegans Hypothetical
           protein C26B9.2 protein.
          Length = 257

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 99  FCFCVVSHLSDKDDSDGNRYYQY 167
           FC   V++ SDK+  + N +Y++
Sbjct: 14  FCVKCVAYTSDKNSEEDNGFYKF 36


>AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical
          protein Y45G12C.8 protein.
          Length = 287

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 72 LLQVLLCSRLIIFLSYNAIIINSF 1
          LL VLL S L I  S+ A+ +NSF
Sbjct: 2  LLIVLLTSILAILFSFLALYLNSF 25


>AC006722-17|ABP57812.1|  141|Caenorhabditis elegans Hypothetical
          protein Y19D10A.17 protein.
          Length = 141

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 72 LLQVLLCSRLIIFLSYNAIIINSF 1
          LL VLL S L I  S+ A+ +NSF
Sbjct: 2  LLIVLLTSILAILFSFLALYLNSF 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,944,275
Number of Sequences: 27780
Number of extensions: 54604
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)