Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4i24
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   3.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   9.5  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   9.5  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 378 SQWRSVYRIEPY*EQEQFKHTQHDAVFNEEVHKRKFXS 491
           SQ+ + Y  E    + + +H+  +A FN E+HK KF S
Sbjct: 662 SQYENRYENENRLNKIKLQHSSSNA-FNPEIHKIKFKS 698


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 343 TEAHGTPQP*PTVNGEAFIVLNLIESKSSSNTRNTMLYSMRRCTSVSSXAFRETDTS 513
           T ++ +PQ   T++  +FIV +   + S+S+T      S     ++ S + + TDT+
Sbjct: 299 TTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPTDTT 355


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -3

Query: 337 ALTHHSCTHTVHAALDDLPRPSVQQRSRGSQSALCPRXSVGGAP 206
           AL H S   T        P+P  QQ+ + SQ    P  S    P
Sbjct: 719 ALAHISSLRTASINQQQQPQPQSQQQQQASQFPQAPSVSSNVRP 762


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 335 RKRLKRTELLNHDRQSMEKRLSY*TLLRARAVQT 436
           +K  ++TE L+ D  S+EKR+ Y      + V+T
Sbjct: 95  KKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKT 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,097
Number of Sequences: 5004
Number of extensions: 33905
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)