Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4i24
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0743 - 21118619-21119071 32 0.34
06_03_0808 - 24799383-24801275 30 1.4
06_03_0384 + 20174441-20175788,20176215-20176858 29 2.4
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 29 3.1
08_01_0955 + 9478018-9478773 29 3.1
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 29 3.1
04_03_0621 - 18102243-18104249 29 3.1
11_06_0313 + 22306497-22308938 28 5.5
04_04_0057 + 22410167-22411330 28 5.5
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 28 5.5
12_01_0808 + 7418878-7420476 27 7.2
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 27 7.2
10_01_0058 - 803826-803830,804471-804689,804817-804888,805056-80... 27 7.2
>07_03_0743 - 21118619-21119071
Length = 150
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 253 GSQSALCPRXSVGGAPGRRRYRALITLVLCWSEVSGDQCEPDRQRAHAXAVV 98
GS SA CPR +V G RR+ R + CW Q PD +R A V+
Sbjct: 67 GSCSASCPRPAVLGMARRRKARPAASARWCWPHT---QPWPDGRRREAVEVL 115
>06_03_0808 - 24799383-24801275
Length = 630
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 324 TVAHTQCTLHLTTCRDPPFSSA-RVEASPRCVLX*ASAVPRGGVAIEPL 181
T A T CT +LT DPP S A + A+P V A++VP +A+ P+
Sbjct: 51 TTATTSCTAYLTFRSDPPLSVAYLLNATPSAVAA-ANSVP---LAVSPV 95
>06_03_0384 + 20174441-20175788,20176215-20176858
Length = 663
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 176 GDKGSIATPPRGTADAXSRTQRGLASTRALLNGGSRQVVKCSVHCV-CATVMC*RKRLKR 352
G K ATP R T R + + + S ++ C V CV C + C + R K
Sbjct: 263 GGKNDTATPARRTRTRSRRKHLSVVTVAVVCGVVSVAMLLCLVGCVACGVLRCRKNRGKE 322
Query: 353 TE 358
E
Sbjct: 323 AE 324
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 343 TEAHGTPQP*PTVNGEAFIVLNLIESKSSSNTRNTM 450
T+ P P PT + E+F +L+ + S SSS TM
Sbjct: 263 TKTAAAPAPPPTASWESFDLLSSMPSTSSSTVTTTM 298
>08_01_0955 + 9478018-9478773
Length = 251
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = -1
Query: 321 VAHTQCTLHLTTCRDPPF---SSARVEASPRCVLX*ASAVPRGGVAIEPLSPLCCAGQRC 151
V HT C L T R PP SSA +P + P +P C RC
Sbjct: 59 VLHTHCALAAPTLRHPPAVTPSSATPATAPCAGAGSTTTAPPAAWTCTRAAPRCRCPSRC 118
Query: 150 R 148
R
Sbjct: 119 R 119
>07_03_1342 - 25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 184 GLDSDASPGHRRRSXEDTARTG 249
G+ SDA PG RRRS + A TG
Sbjct: 1080 GIVSDAEPGGRRRSRQRLAATG 1101
>04_03_0621 - 18102243-18104249
Length = 668
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 118 AHAXAVVDPSVRRVTVQHSLNTRLEAAQGTTQRHLTER 5
AH ++V+P++ VQH +TR T +HL+++
Sbjct: 440 AHQNSLVNPAIGTNEVQHRRSTRATKIYETASQHLSKK 477
>11_06_0313 + 22306497-22308938
Length = 813
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 146 SRHL*PAQHKGDKGSIATPPRGTADAXSRTQRG 244
S HL P+ G+ ++ TPP T D + +RG
Sbjct: 139 SAHLVPSAPGGNITAVQTPPSATTDESGKKKRG 171
>04_04_0057 + 22410167-22411330
Length = 387
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 301 AALDDLPRPSVQQRSRGSQSALCPRXSVGGAP--GRRRYRALITLVLCWSEVSGD 143
A+L +L S + SRG + AL GG G RR++A + + W+ GD
Sbjct: 300 ASLVNLSDMSSEGSSRGGRRALGLAFGNGGGSSHGGRRWQAFLARTVSWARGGGD 354
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 27.9 bits (59), Expect = 5.5
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 140 LISRHL*PAQHKGDKGSIATPPRGTADAX-SRTQRGLASTRALLNGGSRQVVKCSVHCVC 316
+I+ P +G GS P G D S + G+ T +L+ G V S +
Sbjct: 282 IITEKFLPLSSEGSTGSHCWYPPGHGDVFFSLCKSGILDT--MLSQGKEYVFIASSENLG 339
Query: 317 ATVMC*RKRLKRTELLNH 370
ATV + L TE+LNH
Sbjct: 340 ATVDIEIESLTSTEILNH 357
>12_01_0808 + 7418878-7420476
Length = 532
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -3
Query: 352 ALQSLALTHHSCTHTVHAALDDLPRPSVQQRSRGSQSALCPRXSVGGAPG-RRRYRALIT 176
+L SL L + T + AAL D+PR SR + S GG PG R R+L
Sbjct: 127 SLHSLFLYGNRLTGALPAALCDIPRLQNLDVSRNALS--------GGLPGDLRNCRSLQR 178
Query: 175 LVLCWSEVSGD 143
L+L + SG+
Sbjct: 179 LILAGNSFSGE 189
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 166 CWSEVSGDQCEPDRQRAHAXAVVDPSVRRVTVQHSLNTRLEAAQGTTQ 23
CWS+V E R +VD + +QH N RL+ A G+ +
Sbjct: 479 CWSKVPSSPEEDSSSRVSGPELVDELRVQSLIQHE-NVRLDIAIGSAK 525
>10_01_0058 -
803826-803830,804471-804689,804817-804888,805056-805245
Length = 161
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 514 RMCPSLGKLXNLRLCTSSLNTASCCVCLNCSCSQ*GSI 401
RM P+ G LC + + +CC+ C C G I
Sbjct: 41 RMAPAAGGAWTTALCDCADDCNTCCMACWCPCIPVGQI 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,511,626
Number of Sequences: 37544
Number of extensions: 290212
Number of successful extensions: 898
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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