Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4i24
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.49 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.1  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   8.1  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 481 LRLCTSSLNTASCCVCLN 428
           L++C S  ++ SCC+CL+
Sbjct: 343 LQVCRSRRHSDSCCLCLD 360


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 200 ASLSSPYHPCVVLV 159
           +SLSS Y PC+++V
Sbjct: 347 SSLSSFYIPCIIMV 360


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 112 HELAAYPARIDLP 150
           H++ ++PAR+ LP
Sbjct: 616 HQIFSFPARLSLP 628


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 283 PRPSVQQRSRGSQSALCPRXSVGGAPG 203
           P+PS  Q  +  Q    P  S G  PG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPG 49


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 327 ITVAHTQCTLHLTTCRDPPFS-SARVEAS 244
           + V HTQ  LHL     P  S S++ +AS
Sbjct: 662 VIVQHTQSQLHLHLTSPPARSPSSQAQAS 690


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 310 CVCNCDVLTQAT 345
           C+C CD+ T  T
Sbjct: 3   CLCECDLATPRT 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,224
Number of Sequences: 438
Number of extensions: 2223
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)