Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4i20
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 62 6e-11
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 45 1e-05
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.16
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 29 0.65
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 28 1.5
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.6
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 27 3.5
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 4.6
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 26 4.6
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 6.1
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 6.1
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 62.5 bits (145), Expect = 6e-11
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 5/190 (2%)
Frame = +3
Query: 153 SGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRTNWLLVV 332
S I ++S NQD C + L TG +++ + PL +A + G +S+ +M+FR+N LL+V
Sbjct: 2 STINTVSLNQDASCMSVALDTGYKIFQINPLKLRAQRQFND-GGLSIVKMLFRSNVLLLV 60
Query: 333 -----KARKPYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLALPTFQ 497
P L++ DD + E+ I+ + +A+ S + +
Sbjct: 61 GGGGNPKYAPNKLIVWDDVKERPVKELELNFEIKGICFDGKLLAIATASKLFLYQFGNNL 120
Query: 498 RVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRDGGSSAPSVVRCH 677
++ + + LCA+ T T I+ P+ + G LQ+L + H + S+V H
Sbjct: 121 KLQRCLDTQNPKGLCAMVTTVEKTAIV-FPSRKVGQLQILFLFKDHMN-----TSIVPAH 174
Query: 678 RSALVCVCVS 707
S + C+ +S
Sbjct: 175 DSEISCLGIS 184
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 44.8 bits (101), Expect = 1e-05
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Frame = +3
Query: 171 SFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRTNWLLVVKARKPY 350
S+NQD+G + + G +VY P +SK+ G S+CEM++ ++ L V P
Sbjct: 9 SWNQDRGFLSIGSENGYQVYRSNPFT--LCFSKKANG-ASICEMLYESSLLAFVNI-SPE 64
Query: 351 S---LLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLALPTFQRVALLRT 518
S L L+D ++ + + SP+ ++R +++ V++ S+ V L + + L T
Sbjct: 65 STRLLKLVDIKRDIVLCRIFYPSPVLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNT 123
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.1 bits (67), Expect = 0.16
Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 6/134 (4%)
Frame = -2
Query: 703 THTHTSAERWQRTTLGALEPPSRCTLDTSSNCRDPVRCA-GAASICVALGSVAMAHSGLA 527
T H+S + Q + P S + TSSN P+ + +S + S + +S L+
Sbjct: 492 TTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNFTTPITISTSLSSFPTTIVSSSFQYSSLS 551
Query: 526 EDGVRSNATRWNVGNANTCTL-----DVRTTATLSFLARNARIGDLKTTSALKARCWSSS 362
+ +NA ++ ++N+ L + ++ + S L+ + + + ++S++ SSS
Sbjct: 552 SNVTTTNAQSSSLSSSNSSALTHISSSIVSSGSSSALSSSTIVSSINSSSSVFISSVSSS 611
Query: 361 RRRLYGFRAFTTSS 320
+ + TT+S
Sbjct: 612 LQYSSSYVTETTTS 625
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 29.1 bits (62), Expect = 0.65
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 497 LERRQRQHLHAGRQDNGHLIFPGPQRSYRRLEDHLSFEG 381
L +R HL + L+F S RRL H++F G
Sbjct: 296 LSAEERLHLLSNTDTEIRLLFESDNESLRRLSSHIAFNG 334
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3
Query: 285 VSLCEMVFRTNWLLVVKARKPYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTS 464
VSL FR++ +L + R Y +LL+D + ++ P A R+RK++ ++L+S
Sbjct: 256 VSLQSFQFRSSQILSLCFRPKYKMLLVDTFNYELNSYQLYLIPGYA-RSRKNEQPILLSS 314
Query: 465 SVQVL 479
VL
Sbjct: 315 RKCVL 319
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 360 LLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLALPTFQRV 503
L DD++ A ++FKS + + R + +LTS +Q ++P F V
Sbjct: 754 LFDDKEHACSLTLIFKSIWKVKKLRWFFLLGLLTSLIQGASVPIFAYV 801
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 272 GAGRGVPMRDGVPHQLATRGESSEAVQPP 358
GAG +PM+D ++ GE +QPP
Sbjct: 444 GAGAQLPMKDTQGQKIVRVGEQITRIQPP 472
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 80 ENIQNIKSMFMIISRRRRHGAPEEQWHNELEFQSGPRLFHMLSEDWP 220
E +QN + IIS HG E W E+ +L E++P
Sbjct: 143 ELVQNENTFTQIISEPS-HGITFESWEKEISIDGKTEEISLLLEEYP 188
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 408 SPIRALRARKDKVAVVLTSSVQVLALPTFQRVALLRTPSSARPLCAIATEPNATQILA-- 581
S + + + +DK+A+ + V++ TF+ V +L P + ++ PN + + A
Sbjct: 164 SDVYDVSSTEDKLAIAVDDRVEIYDWNTFELVQVLYMPVERATVRGVSFLPNQSIVAAYN 223
Query: 582 --APAHRTGSLQLLDVSS 629
+ R SL D SS
Sbjct: 224 YIKDSKRFASLVRFDYSS 241
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 303 PSRIGTPRPAPLYCNAPSRPGAP 235
P+ + + R AP Y +AP+RP P
Sbjct: 346 PTTVSSERNAPPYPSAPTRPTPP 368
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/64 (21%), Positives = 27/64 (42%)
Frame = +3
Query: 312 TNWLLVVKARKPYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLALPT 491
+ W + + +PY ++LD Q + +V + K + L+ V V L +
Sbjct: 125 SQWSIFIAKHRPYGFMVLDSNQNTKEGGLVISD--EQVMVFKSFIFFALSDGVPVALLGS 182
Query: 492 FQRV 503
+Q V
Sbjct: 183 YQFV 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,784
Number of Sequences: 5004
Number of extensions: 51234
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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