Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4i20
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 83 3e-16
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350... 75 7e-14
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 67 1e-11
02_05_1034 - 33649634-33649651,33649699-33649811,33649938-336500... 59 3e-09
01_01_1064 + 8393519-8394475 35 0.073
02_05_0171 - 26441007-26441918 33 0.29
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 31 1.2
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 31 1.2
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 30 1.6
04_04_1125 + 31085106-31085714 29 2.7
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 3.6
06_01_0258 - 1913408-1913506,1913593-1913631,1913720-1913859,191... 29 3.6
05_05_0175 + 22966151-22967614 29 3.6
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 29 3.6
12_02_0646 + 21484532-21484656,21484759-21484774 29 4.8
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 29 4.8
09_06_0236 - 21781508-21783043,21783307-21783504 29 4.8
08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883... 28 6.3
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 6.3
06_03_0854 + 25400855-25403741,25406174-25407708 28 8.4
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 82.6 bits (195), Expect = 3e-16
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 14/194 (7%)
Frame = +3
Query: 168 LSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGE---------VSLCEMVFRTNW 320
+SFNQD GCF K+G R+YN +P E G+ + + EM+FR N
Sbjct: 102 ISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFRCNI 161
Query: 321 LLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLAL 485
L +V P +++ DD Q E+ F+SP+R +R R+D++ VVL + + V
Sbjct: 162 LALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYNF 221
Query: 486 PTFQRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRDGGSSAPSV 665
+ V + T + + LCA++ +P + +L P + G +++ G+
Sbjct: 222 ADLKLVHQIETAPNPKGLCAVSQQPGSI-VLVCPGAQKGQVRV-------EHYGARKTKF 273
Query: 666 VRCHRSALVCVCVS 707
+ H S + C +S
Sbjct: 274 INAHTSRVACFALS 287
>01_01_0476 +
3505799-3506479,3506639-3506897,3508427-3508550,
3508922-3509030
Length = 390
Score = 74.5 bits (175), Expect = 7e-14
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Frame = +3
Query: 159 ITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRTNWLLVVKA 338
+ S+S+NQD GCF G R++N +P E + G + EM+FR N L +V
Sbjct: 20 LLSVSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDLKS-GGFGIVEMLFRCNILALVGG 78
Query: 339 RK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLALPTFQRV 503
P +++ DD + E F+S +RA++ KD + +VL + V + +
Sbjct: 79 GSNAHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLL 138
Query: 504 ALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQL 614
+ T S+ + LC ++ N T +LA P G +++
Sbjct: 139 HQIETQSNPKGLCCLSHHSN-TSVLACPGVHQGHVRV 174
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 67.3 bits (157), Expect = 1e-11
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Frame = +3
Query: 126 VEDMARRKSSGIT--SLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCE 299
VE+ + G+ S+S+NQD CF G RV++ +P E G + + E
Sbjct: 202 VEEASGSDDDGVELLSVSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAE 261
Query: 300 MVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTS 464
M+FRT+ + A P L L DD + F S IRA+R KD VVL
Sbjct: 262 MLFRTSIFGLAGAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEK 321
Query: 465 SVQVLALPTFQRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSL 608
++ V + RT S+ LC ++ NA+ + A P G +
Sbjct: 322 TINVYRFKDLRLFYQARTVSNPNGLCCLSHHANAS-VFACPGTSKGQV 368
>02_05_1034 -
33649634-33649651,33649699-33649811,33649938-33650029,
33650212-33650321,33650444-33650517,33650877-33650950,
33651091-33651158
Length = 182
Score = 59.3 bits (137), Expect = 3e-09
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Frame = +3
Query: 159 ITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRTNWLLVVKA 338
I SFNQD F K G R+++ K HY K +G + EM FRTN L +V
Sbjct: 13 IRCASFNQDNSLFYVGTKDGFRIFDAH--TGKLHYQKN-IGGIGNMEMYFRTNILAIVGT 69
Query: 339 RK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLALPTFQRV 503
+ P L L+D K ++ FK+ + A+R + ++ VVL + + + +
Sbjct: 70 GEQPVLSPRCLRLIDTVAAVTKKDLNFKTSVLAVRLSRTRLVVVLQDRTFIYDVNSTTIL 129
Query: 504 ALLRTPSSARPLCAIATEPNATQILAAPA 590
+ T + + LCA A A LA PA
Sbjct: 130 EEIETVPNTKGLCAFAPNSEAC-YLAIPA 157
>01_01_1064 + 8393519-8394475
Length = 318
Score = 34.7 bits (76), Expect = 0.073
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = -3
Query: 312 CGTPSRIGTPRPAPLYCNAPSRPGAPHYRHAGQSSDSM*NSLGPD*NSSSLCHCSSGAPC 133
C G RP P + S P +PH + SDS +S ++SS SS A
Sbjct: 143 CVDEGESGGQRPPPRRARSASPPRSPHLAKIAEPSDSFASSSSSSTSTSSSSSSSSSAKS 202
Query: 132 LRRR 121
RRR
Sbjct: 203 TRRR 206
>02_05_0171 - 26441007-26441918
Length = 303
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +2
Query: 275 AGRGVPMRDGVPHQLATRGESSEAVQPPPAGRPATCLQS*GGLQVAD 415
A R V D + H L E + A P P RP C S G VAD
Sbjct: 6 ASREVAALDSIRHHLLEEEEETPATAPAPTRRPVYCRSSSFGSLVAD 52
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Frame = +2
Query: 287 VPMRDGVPHQLATRGESSEAVQPPPAGRPATCLQS*GGLQVADTS--VAGQER*GGRCPD 460
+P+ P L+ + A GR TC + G + S AG E R
Sbjct: 408 MPLLPASPPPLSLSRSLAAAAAASRRGRAVTCAAARGAASSSSASFDAAGFEAERLRLDA 467
Query: 461 VQRAGVGVADVPAGRVAADAVLREAAVRHRHGTQRDADTGRARAP 595
RAG+ A AG AAD + A+R R +A+ G AR P
Sbjct: 468 EARAGMASAAAVAGAEAADPKAWKWAIRKRVWDALEAE-GVARDP 511
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 30.7 bits (66), Expect = 1.2
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Frame = -2
Query: 613 NCRDPVRCAGAASICVALGSVAMAHSGLAEDGVRSNATRWNVGNANTCTLDVRTTATLSF 434
+CR R + VA G M+ S AEDG + RW V + + T A +
Sbjct: 52 HCRYATRGSSKGQPRVAGG--VMSSSAAAEDGEAAYWLRWQVFVCGALIV-LPTAAAAAL 108
Query: 433 LARNARIGDLKTTSALKARCWSSSRRR-LYGFRAFTTSSQ---LVRNTISH 293
L R R + L CW+ L G+RAF ++ LVR + H
Sbjct: 109 LPRLRRAAAPLRGTDLWVPCWARLHPGWLLGYRAFALAAAVALLVRLLVGH 159
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 294 IGTPRPAPLYCNAPSRPGAPHYRHAGQSSDSM 199
I P+ PL C S P APH RH+ S S+
Sbjct: 38 IQMPQKVPLPCYLQSPPSAPHPRHSAAFSRSL 69
>04_04_1125 + 31085106-31085714
Length = 202
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 345 ASELSPRVASWCGTPSRIGTPRPAPLYCNAPSRPGAP 235
+++L+P A+WCG S T +P P C P P
Sbjct: 19 SAQLAPAAATWCG--SNCPTTKPPPPPCQPPPPTPTP 53
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 495 QRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRDGGSSAPSVVR 671
+R++L + P++ C ATEP + AP G + + + DGG+ S+ R
Sbjct: 10 RRISLPKPPAATGIGCYYATEPEGRKPKTAPLQSRGMVDRFRLRAKGGDGGNGCISLRR 68
>06_01_0258 -
1913408-1913506,1913593-1913631,1913720-1913859,
1914148-1914154,1914270-1914440,1914541-1914712,
1915367-1915741,1915892-1915910,1916508-1916581,
1916744-1916937
Length = 429
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 328 TSSQLVRNTISHRDTSPSSSLL*CAFSTRGSTL*TRRP 215
TSS T+ H DT S+ C +S+ GS++ RRP
Sbjct: 134 TSSSSSPLTVQHDDTETSTPSQCCLWSSPGSSILVRRP 171
>05_05_0175 + 22966151-22967614
Length = 487
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -3
Query: 333 SPRVASWCGTPSRIGTPRPAPLYCNAPSRPGAP 235
+PR S CG+ S GTPR A C PGAP
Sbjct: 74 TPR-RSCCGSSSAAGTPRSA-ARCGGGGSPGAP 104
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 147 KSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPL 245
+++G+ S++FN D C L L+V++ EP+
Sbjct: 248 ETTGVRSMTFNPDGRSLLCGLHESLKVFSWEPI 280
>12_02_0646 + 21484532-21484656,21484759-21484774
Length = 46
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 471 QVLALPTFQRVALLRTPSSARPLCAIATEP 560
++L LP +R L P + RPLCAI P
Sbjct: 16 RLLPLPNNKRTPFLTVPFTNRPLCAINYSP 45
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 411 PIRALRARKDKVAVVLTSSVQVLALPTFQRVALLRTPSSARPLCAIATEPNATQILAAPA 590
P A+ R+D +VV+ + A +++ L+ TP+ ARPL A A + AP+
Sbjct: 48 PATAILVREDPPSVVVDVDTPLPAAAEERKLLLVVTPTRARPLQAYYLRRLAHTLRLAPS 107
>09_06_0236 - 21781508-21783043,21783307-21783504
Length = 577
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 459 TSSVQVLALPTFQRVALLRTPSSARPLCAIATEPNATQ 572
T VQ LAL R LR P ARP+ A A TQ
Sbjct: 536 TGKVQKLALRDMARRLRLRAPDKARPVAAPARHGPLTQ 573
>08_02_0299 +
15487202-15487227,15487369-15487491,15488277-15488397,
15488572-15488700,15489954-15490063,15490139-15490322,
15491155-15491346,15492190-15492411,15492501-15492687,
15494009-15494103
Length = 462
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Frame = -2
Query: 688 SAERWQRTTLGALEPPSRCTLDTSSNCR----DPVRCAGAASICVALGSVAMAHSGLAED 521
S + W+R +GA D+S N + P+ G + VAL + G AE
Sbjct: 254 SLQSWERANIGAFGTADPSAADSSRNPQGQYGTPMPYLGETKVEVALSGTGVKDEG-AES 312
Query: 520 GVRSNATR----WNVGNANTCTLDVR-TTATLSFLARNARIGDLK 401
G N + W + T + R T+ S L + + D K
Sbjct: 313 GTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNLDEKSEVKDEK 357
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = -2
Query: 652 LEPPSRCTLDTSSNCRDPVRCAGA---ASICVALGSVAMAHSGLAE-DGVRSNATRWNVG 485
L PPS ++ TSS +D V+ G SIC+ V AE DG+ N +
Sbjct: 297 LIPPSDMSVQTSSTLKDLVKKEGTPAKKSICILRNDVKKNLPSSAEFDGLNHN----GIN 352
Query: 484 NANTCTLDVRTTAT 443
TC D + +T
Sbjct: 353 MVKTCLSDTQLKST 366
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +2
Query: 341 EAVQPPPAGRPATCLQS*GG----LQVADTSVAGQER*GGRCPDVQRAGVGV---ADVPA 499
EA+ PPP PA+ L + GG + +A+ +VAG+ R GR +RA V A P
Sbjct: 434 EALAPPPPAAPAS-LSASGGERGCVAIANAAVAGRGR--GRGSGAKRAPTAVTVGAPPPQ 490
Query: 500 GRVAADA 520
R A A
Sbjct: 491 ARTPAAA 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,518
Number of Sequences: 37544
Number of extensions: 449507
Number of successful extensions: 1898
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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