Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4i20
(707 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456725-1|CAG33006.1| 360|Homo sapiens JM5 protein. 131 2e-30
BC003037-1|AAH03037.1| 360|Homo sapiens WD repeat domain 45 pro... 131 2e-30
BC000464-1|AAH00464.1| 360|Homo sapiens WD repeat domain 45 pro... 131 2e-30
AY691428-1|AAV80764.1| 360|Homo sapiens WIPI-4 protein. 131 2e-30
AJ005897-1|CAA06754.1| 360|Homo sapiens JM5 protein. 131 2e-30
BC069206-1|AAH69206.1| 361|Homo sapiens WD repeat domain 45 pro... 130 4e-30
AM182326-1|CAJ57996.1| 344|Homo sapiens WDR45-like protein prot... 101 3e-21
BC007838-1|AAH07838.1| 286|Homo sapiens WDR45L protein protein. 60 6e-09
BC000974-1|AAH00974.1| 150|Homo sapiens WDR45L protein protein. 60 6e-09
AY691427-1|AAV80763.1| 286|Homo sapiens WIPI-3 protein. 60 6e-09
AF091083-1|AAC72952.1| 286|Homo sapiens unknown protein. 60 6e-09
CR456770-1|CAG33051.1| 286|Homo sapiens LOC56270 protein. 59 2e-08
BC009027-1|AAH09027.1| 303|Homo sapiens WDR45 protein protein. 59 2e-08
AK131080-1|BAC85130.1| 563|Homo sapiens FLJ00279 protein protein. 36 0.19
M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collage... 33 1.3
BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein. 33 1.3
BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein. 33 1.3
AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alph... 33 1.3
AK131104-1|BAC85154.1| 2760|Homo sapiens FLJ00341 protein protein. 33 1.3
AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein. 33 1.3
AB011112-1|BAA25466.3| 2041|Homo sapiens KIAA0540 protein protein. 33 1.3
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 32 1.7
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 32 1.7
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 32 1.7
D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein. 32 2.3
BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase... 32 2.3
BC047569-1|AAH47569.1| 253|Homo sapiens membrane-associated rin... 31 3.1
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 31 4.0
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 31 4.0
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 31 4.0
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 31 4.0
BC126479-1|AAI26480.1| 200|Homo sapiens chromosome 4 open readi... 31 5.3
BC126477-1|AAI26478.1| 200|Homo sapiens chromosome 4 open readi... 31 5.3
AK054839-1|BAB70812.1| 200|Homo sapiens protein ( Homo sapiens ... 31 5.3
AL590103-7|CAI12130.1| 93|Homo sapiens heparan sulfate proteog... 30 7.1
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 30 9.3
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 30 9.3
X06700-1|CAA29886.1| 517|Homo sapiens alpha1 (III) collagen pro... 30 9.3
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 30 9.3
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 30 9.3
AL606970-2|CAI14850.1| 774|Homo sapiens RP11-503C24.7 protein. 30 9.3
AK126656-1|BAC86631.1| 146|Homo sapiens protein ( Homo sapiens ... 30 9.3
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 30 9.3
>CR456725-1|CAG33006.1| 360|Homo sapiens JM5 protein.
Length = 360
Score = 131 bits (317), Expect = 2e-30
Identities = 75/203 (36%), Positives = 113/203 (55%), Gaps = 12/203 (5%)
Frame = +3
Query: 135 MARRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRT 314
M ++ G+TSL FNQDQ CF C ++TG+R+YNVEPL+EK H E++G + L EM+ R+
Sbjct: 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRS 60
Query: 315 NWL-LVVKARKP----YSLLLLD------DQQRAFKAEVVFKSPIRALRARKDKVAVVLT 461
N L LV P S+L+ D D + E F P+ ++R R DK+ +VL
Sbjct: 61 NLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLK 120
Query: 462 SSVQVLALPTFQRVAL-LRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHR 638
+ + V + P R T + + LC + Q+L P H+ GSLQL+D++S +
Sbjct: 121 NRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLE-KQLLVFPGHKCGSLQLVDLAST-K 178
Query: 639 DGGSSAPSVVRCHRSALVCVCVS 707
G SSAP + H+S + CV ++
Sbjct: 179 PGTSSAPFTINAHQSDIACVSLN 201
>BC003037-1|AAH03037.1| 360|Homo sapiens WD repeat domain 45
protein.
Length = 360
Score = 131 bits (317), Expect = 2e-30
Identities = 75/203 (36%), Positives = 113/203 (55%), Gaps = 12/203 (5%)
Frame = +3
Query: 135 MARRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRT 314
M ++ G+TSL FNQDQ CF C ++TG+R+YNVEPL+EK H E++G + L EM+ R+
Sbjct: 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRS 60
Query: 315 NWL-LVVKARKP----YSLLLLD------DQQRAFKAEVVFKSPIRALRARKDKVAVVLT 461
N L LV P S+L+ D D + E F P+ ++R R DK+ +VL
Sbjct: 61 NLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLK 120
Query: 462 SSVQVLALPTFQRVAL-LRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHR 638
+ + V + P R T + + LC + Q+L P H+ GSLQL+D++S +
Sbjct: 121 NRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLE-KQLLVFPGHKCGSLQLVDLAST-K 178
Query: 639 DGGSSAPSVVRCHRSALVCVCVS 707
G SSAP + H+S + CV ++
Sbjct: 179 PGTSSAPFTINAHQSDIACVSLN 201
>BC000464-1|AAH00464.1| 360|Homo sapiens WD repeat domain 45
protein.
Length = 360
Score = 131 bits (317), Expect = 2e-30
Identities = 75/203 (36%), Positives = 113/203 (55%), Gaps = 12/203 (5%)
Frame = +3
Query: 135 MARRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRT 314
M ++ G+TSL FNQDQ CF C ++TG+R+YNVEPL+EK H E++G + L EM+ R+
Sbjct: 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRS 60
Query: 315 NWL-LVVKARKP----YSLLLLD------DQQRAFKAEVVFKSPIRALRARKDKVAVVLT 461
N L LV P S+L+ D D + E F P+ ++R R DK+ +VL
Sbjct: 61 NLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLK 120
Query: 462 SSVQVLALPTFQRVAL-LRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHR 638
+ + V + P R T + + LC + Q+L P H+ GSLQL+D++S +
Sbjct: 121 NRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLE-KQLLVFPGHKCGSLQLVDLAST-K 178
Query: 639 DGGSSAPSVVRCHRSALVCVCVS 707
G SSAP + H+S + CV ++
Sbjct: 179 PGTSSAPFTINAHQSDIACVSLN 201
>AY691428-1|AAV80764.1| 360|Homo sapiens WIPI-4 protein.
Length = 360
Score = 131 bits (317), Expect = 2e-30
Identities = 75/203 (36%), Positives = 113/203 (55%), Gaps = 12/203 (5%)
Frame = +3
Query: 135 MARRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRT 314
M ++ G+TSL FNQDQ CF C ++TG+R+YNVEPL+EK H E++G + L EM+ R+
Sbjct: 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRS 60
Query: 315 NWL-LVVKARKP----YSLLLLD------DQQRAFKAEVVFKSPIRALRARKDKVAVVLT 461
N L LV P S+L+ D D + E F P+ ++R R DK+ +VL
Sbjct: 61 NLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLK 120
Query: 462 SSVQVLALPTFQRVAL-LRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHR 638
+ + V + P R T + + LC + Q+L P H+ GSLQL+D++S +
Sbjct: 121 NRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLE-KQLLVFPGHKCGSLQLVDLAST-K 178
Query: 639 DGGSSAPSVVRCHRSALVCVCVS 707
G SSAP + H+S + CV ++
Sbjct: 179 PGTSSAPFTINAHQSDIACVSLN 201
>AJ005897-1|CAA06754.1| 360|Homo sapiens JM5 protein.
Length = 360
Score = 131 bits (317), Expect = 2e-30
Identities = 75/203 (36%), Positives = 113/203 (55%), Gaps = 12/203 (5%)
Frame = +3
Query: 135 MARRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRT 314
M ++ G+TSL FNQDQ CF C ++TG+R+YNVEPL+EK H E++G + L EM+ R+
Sbjct: 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRS 60
Query: 315 NWL-LVVKARKP----YSLLLLD------DQQRAFKAEVVFKSPIRALRARKDKVAVVLT 461
N L LV P S+L+ D D + E F P+ ++R R DK+ +VL
Sbjct: 61 NLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLK 120
Query: 462 SSVQVLALPTFQRVAL-LRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHR 638
+ + V + P R T + + LC + Q+L P H+ GSLQL+D++S +
Sbjct: 121 NRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLE-KQLLVFPGHKCGSLQLVDLAST-K 178
Query: 639 DGGSSAPSVVRCHRSALVCVCVS 707
G SSAP + H+S + CV ++
Sbjct: 179 PGTSSAPFTINAHQSDIACVSLN 201
>BC069206-1|AAH69206.1| 361|Homo sapiens WD repeat domain 45
protein.
Length = 361
Score = 130 bits (315), Expect = 4e-30
Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 13/204 (6%)
Frame = +3
Query: 135 MARRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRT 314
M ++ G+TSL FNQDQ CF C ++TG+R+YNVEPL+EK H E++G + L EM+ R+
Sbjct: 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRS 60
Query: 315 NWLLVV------KARKPYSLLLLD------DQQRAFKAEVVFKSPIRALRARKDKVAVVL 458
N L +V K + ++L+ D D + E F P+ ++R R DK+ +VL
Sbjct: 61 NLLALVGGGSSPKFSEISAVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVL 120
Query: 459 TSSVQVLALPTFQRVAL-LRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVH 635
+ + V + P R T + + LC + Q+L P H+ GSLQL+D++S
Sbjct: 121 KNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLE-KQLLVFPGHKCGSLQLVDLAST- 178
Query: 636 RDGGSSAPSVVRCHRSALVCVCVS 707
+ G SSAP + H+S + CV ++
Sbjct: 179 KPGTSSAPFTINAHQSDIACVSLN 202
>AM182326-1|CAJ57996.1| 344|Homo sapiens WDR45-like protein
protein.
Length = 344
Score = 101 bits (241), Expect = 3e-21
Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 6/191 (3%)
Frame = +3
Query: 153 SGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCEMVFRTNWLLVV 332
+G+ FNQD GCF C ++ G RVYN +PL EK E G V EM+FR N+L +V
Sbjct: 11 NGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLE-GGVGHVEMLFRCNYLALV 69
Query: 333 KARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLALP-TF 494
K P +++ DD ++ E+ F + ++A++ R+D++ VVL S ++V
Sbjct: 70 GGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNP 129
Query: 495 QRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRDGGSSAPSVVRC 674
++ + T + + LC + N +LA P TG +QL+D++S + P +
Sbjct: 130 HQLHVFETCYNPKGLCVLCPNSN-NSLLAFPGTHTGHVQLVDLASTEK-----PPVDIPA 183
Query: 675 HRSALVCVCVS 707
H L C+ ++
Sbjct: 184 HEGVLSCIALN 194
>BC007838-1|AAH07838.1| 286|Homo sapiens WDR45L protein protein.
Length = 286
Score = 60.5 bits (140), Expect = 6e-09
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Frame = +3
Query: 300 MVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTS 464
M+FR N+L +V K P +++ DD ++ E+ F + ++A++ R+D++ VVL S
Sbjct: 1 MLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDS 60
Query: 465 SVQVLALP-TFQRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRD 641
++V ++ + T + + LC + N +LA P TG +QL+D++S +
Sbjct: 61 MIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN-NSLLAFPGTHTGHVQLVDLASTEK- 118
Query: 642 GGSSAPSVVRCHRSALVCVCVS 707
P + H L C+ ++
Sbjct: 119 ----PPVDIPAHEGVLSCIALN 136
>BC000974-1|AAH00974.1| 150|Homo sapiens WDR45L protein protein.
Length = 150
Score = 60.5 bits (140), Expect = 6e-09
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Frame = +3
Query: 300 MVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTS 464
M+FR N+L +V K P +++ DD ++ E+ F + ++A++ R+D++ VVL S
Sbjct: 1 MLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDS 60
Query: 465 SVQVLALP-TFQRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRD 641
++V ++ + T + + LC + N +LA P TG +QL+D++S +
Sbjct: 61 MIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN-NSLLAFPGTHTGHVQLVDLASTEK- 118
Query: 642 GGSSAPSVVRCHRSALVCVCVS 707
P + H L C+ ++
Sbjct: 119 ----PPVDIPAHEGVLSCIALN 136
>AY691427-1|AAV80763.1| 286|Homo sapiens WIPI-3 protein.
Length = 286
Score = 60.5 bits (140), Expect = 6e-09
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Frame = +3
Query: 300 MVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTS 464
M+FR N+L +V K P +++ DD ++ E+ F + ++A++ R+D++ VVL S
Sbjct: 1 MLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDS 60
Query: 465 SVQVLALP-TFQRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRD 641
++V ++ + T + + LC + N +LA P TG +QL+D++S +
Sbjct: 61 MIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN-NSLLAFPGTHTGHVQLVDLASTEK- 118
Query: 642 GGSSAPSVVRCHRSALVCVCVS 707
P + H L C+ ++
Sbjct: 119 ----PPVDIPAHEGVLSCIALN 136
>AF091083-1|AAC72952.1| 286|Homo sapiens unknown protein.
Length = 286
Score = 60.5 bits (140), Expect = 6e-09
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Frame = +3
Query: 300 MVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTS 464
M+FR N+L +V K P +++ DD ++ E+ F + ++A++ R+D++ VVL S
Sbjct: 1 MLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDS 60
Query: 465 SVQVLALP-TFQRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRD 641
++V ++ + T + + LC + N +LA P TG +QL+D++S +
Sbjct: 61 MIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN-NSLLAFPGTHTGHVQLVDLASTEK- 118
Query: 642 GGSSAPSVVRCHRSALVCVCVS 707
P + H L C+ ++
Sbjct: 119 ----PPVDIPAHEGVLSCIALN 136
>CR456770-1|CAG33051.1| 286|Homo sapiens LOC56270 protein.
Length = 286
Score = 58.8 bits (136), Expect = 2e-08
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Frame = +3
Query: 300 MVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVLTS 464
M+FR N+L + K P +++ DD ++ E+ F + ++A++ R+D++ VVL S
Sbjct: 1 MLFRCNYLALAGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDS 60
Query: 465 SVQVLALP-TFQRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRD 641
++V ++ + T + + LC + N +LA P TG +QL+D++S +
Sbjct: 61 MIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN-NSLLAFPGTHTGHVQLVDLASTEK- 118
Query: 642 GGSSAPSVVRCHRSALVCVCVS 707
P + H L C+ ++
Sbjct: 119 ----PPVDIPAHEGVLSCIALN 136
>BC009027-1|AAH09027.1| 303|Homo sapiens WDR45 protein protein.
Length = 303
Score = 58.8 bits (136), Expect = 2e-08
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Frame = +3
Query: 369 DQQRAFKAEVVFKSPIRALRARKDKVAVVLTSSVQVLALPTFQRVAL----LRTPSSARP 536
D + E F P+ ++R R DK+ +VL + + V + P R P +A P
Sbjct: 22 DSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDNPRKLFEFDTRDNPKAAHP 81
Query: 537 --------LCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRDGGSSAPSVVRCHRSALV 692
LC + Q+L P H+ GSLQL+D++S + G SSAP + H+S +
Sbjct: 82 TPHLHTLGLCDLCPSLEK-QLLVFPGHKCGSLQLVDLAST-KPGTSSAPFTINAHQSDIA 139
Query: 693 CVCVS 707
CV ++
Sbjct: 140 CVSLN 144
>AK131080-1|BAC85130.1| 563|Homo sapiens FLJ00279 protein protein.
Length = 563
Score = 35.5 bits (78), Expect = 0.19
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +1
Query: 235 WSP---WSRRRITVKRSWARCPYARWCSAPTGYSW*KLGSRTASSCW--TTSNVPSKLRW 399
W P W R R RSW C + SA +W + R+ +S W ++PS R
Sbjct: 8 WPPTTSWRRPRRGCSRSWTTCWWTWTTSARARATW-RRSRRSLTSSWRRRRPSLPSMQRS 66
Query: 400 SSS--RRYERCGPGKIRWP 450
++ RR ER P RWP
Sbjct: 67 ATGLRRRPERRRPRLCRWP 85
>M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collagen
protein.
Length = 635
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 236 GAPGREGALQ*RG----AGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
GAPG+ GA G AG G P DG+P +GES P P G P
Sbjct: 152 GAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEP 201
>BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 236 GAPGREGALQ*RG----AGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
GAPG+ GA G AG G P DG+P +GES P P G P
Sbjct: 171 GAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEP 220
>BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 236 GAPGREGALQ*RG----AGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
GAPG+ GA G AG G P DG+P +GES P P G P
Sbjct: 171 GAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEP 220
>AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alpha 2
protein.
Length = 703
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 236 GAPGREGALQ*RG----AGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
GAPG+ GA G AG G P DG+P +GES P P G P
Sbjct: 217 GAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEP 266
>AK131104-1|BAC85154.1| 2760|Homo sapiens FLJ00341 protein protein.
Length = 2760
Score = 32.7 bits (71), Expect = 1.3
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -3
Query: 375 AGRPAGGGCTASELSPRVASWCGTPSRIGTPRPAP 271
+G AGGG ++ L+P AS GTPS + PRP P
Sbjct: 1373 SGNTAGGGGSSGTLTP--ASQPGTPSPLDGPRPFP 1405
>AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein.
Length = 705
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 236 GAPGREGALQ*RG----AGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
GAPG+ GA G AG G P DG+P +GES P P G P
Sbjct: 219 GAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEP 268
>AB011112-1|BAA25466.3| 2041|Homo sapiens KIAA0540 protein protein.
Length = 2041
Score = 32.7 bits (71), Expect = 1.3
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -3
Query: 375 AGRPAGGGCTASELSPRVASWCGTPSRIGTPRPAP 271
+G AGGG ++ L+P AS GTPS + PRP P
Sbjct: 654 SGNTAGGGGSSGTLTP--ASQPGTPSPLDGPRPFP 686
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 32.3 bits (70), Expect = 1.7
Identities = 20/46 (43%), Positives = 21/46 (45%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G GREGA A G P RDG P RGE+ A P G P
Sbjct: 1010 GESGREGA----PAAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 32.3 bits (70), Expect = 1.7
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = -3
Query: 465 WTSGQRPPYLSWPATLVSAT*RPPQL*RHVAGRPAGGGCTASELSPRVA-SWCGTPSRIG 289
W G P Y +W ++ S P AG AS SP + +W TP G
Sbjct: 1520 WNQGATPAYGAWSPSVGSGM--TPG----AAGFSPSAASDASGFSPGYSPAWSPTPGSPG 1573
Query: 288 TPRPAPLYCNAPSRPGAPHY 229
+P P+ Y +P +P Y
Sbjct: 1574 SPGPSSPYIPSPGGAMSPSY 1593
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 32.3 bits (70), Expect = 1.7
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = -3
Query: 465 WTSGQRPPYLSWPATLVSAT*RPPQL*RHVAGRPAGGGCTASELSPRVA-SWCGTPSRIG 289
W G P Y +W ++ S P AG AS SP + +W TP G
Sbjct: 1520 WNQGATPAYGAWSPSVGSGM--TPG----AAGFSPSAASDASGFSPGYSPAWSPTPGSPG 1573
Query: 288 TPRPAPLYCNAPSRPGAPHY 229
+P P+ Y +P +P Y
Sbjct: 1574 SPGPSSPYIPSPGGAMSPSY 1593
>D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.
Length = 1203
Score = 31.9 bits (69), Expect = 2.3
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = -2
Query: 703 THTHTSAERW-QRTTLGALEPPSRCTLDTSSNCRDP---VRCAGAASICVALGSVAMAHS 536
T T + A W R L P C LD SS+ +DP +R A A G M
Sbjct: 299 TSTTSVASSWYNRNNLAMRAEPLSCALDDSSDSQDPTKEIRFTEAVRKLTARGFEKMPRQ 358
Query: 535 G--LAEDGVRSNATRWNVGN 482
G L + + + +WNV N
Sbjct: 359 GCQLEQSSFLNPSFQWNVLN 378
>BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine
ligase-like family, member 4 protein.
Length = 1199
Score = 31.9 bits (69), Expect = 2.3
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = -2
Query: 703 THTHTSAERW-QRTTLGALEPPSRCTLDTSSNCRDP---VRCAGAASICVALGSVAMAHS 536
T T + A W R L P C LD SS+ +DP +R A A G M
Sbjct: 295 TSTTSVASSWYNRNNLAMRAEPLSCALDDSSDSQDPTKEIRFTEAVRKLTARGFEKMPRQ 354
Query: 535 G--LAEDGVRSNATRWNVGN 482
G L + + + +WNV N
Sbjct: 355 GCQLEQSSFLNPSFQWNVLN 374
>BC047569-1|AAH47569.1| 253|Homo sapiens membrane-associated ring
finger (C3HC4) 3 protein.
Length = 253
Score = 31.5 bits (68), Expect = 3.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 483 LPTFQRVALLRTPSSARPLCAIATEPNATQILAAPAHRTGSLQLLDVSSVHRDGGSSAPS 662
L T R ++P + RP+C I E ++ + L +P TG+L + S + SS S
Sbjct: 52 LSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTS 111
Query: 663 VVR-CH 677
CH
Sbjct: 112 YCELCH 117
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/46 (45%), Positives = 22/46 (47%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G GREGA GA G P RDG P RGE+ A P G P
Sbjct: 1010 GESGREGA---PGA-EGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/46 (45%), Positives = 22/46 (47%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G GREGA GA G P RDG P RGE+ A P G P
Sbjct: 1010 GESGREGA---PGA-EGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/46 (45%), Positives = 22/46 (47%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G GREGA GA G P RDG P RGE+ A P G P
Sbjct: 1007 GESGREGA---PGA-EGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1048
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/46 (45%), Positives = 22/46 (47%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G GREGA GA G P RDG P RGE+ A P G P
Sbjct: 1013 GESGREGA---PGA-EGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1054
>BC126479-1|AAI26480.1| 200|Homo sapiens chromosome 4 open reading
frame 38 protein.
Length = 200
Score = 30.7 bits (66), Expect = 5.3
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 348 TASELSPRVASWCGTPSR-IGTPRPAPLYCNAPSRPGAP 235
T++E + R A GTP R P AP APSRPGAP
Sbjct: 2 TSAETASRAAESGGTPVRPCSRPHRAPSPA-APSRPGAP 39
>BC126477-1|AAI26478.1| 200|Homo sapiens chromosome 4 open reading
frame 38 protein.
Length = 200
Score = 30.7 bits (66), Expect = 5.3
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 348 TASELSPRVASWCGTPSR-IGTPRPAPLYCNAPSRPGAP 235
T++E + R A GTP R P AP APSRPGAP
Sbjct: 2 TSAETASRAAESGGTPVRPCSRPHRAPSPA-APSRPGAP 39
>AK054839-1|BAB70812.1| 200|Homo sapiens protein ( Homo sapiens
cDNA FLJ30277 fis, clone BRACE2002752. ).
Length = 200
Score = 30.7 bits (66), Expect = 5.3
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 348 TASELSPRVASWCGTPSR-IGTPRPAPLYCNAPSRPGAP 235
T++E + R A GTP R P AP APSRPGAP
Sbjct: 2 TSAETASRAAESGGTPVRPCSRPHRAPSPA-APSRPGAP 39
>AL590103-7|CAI12130.1| 93|Homo sapiens heparan sulfate
proteoglycan 2 protein.
Length = 93
Score = 30.3 bits (65), Expect = 7.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 378 VAGRPAGGGCTASELSP---RVASWCGTPSRIGTPRPAP 271
+ GRP G C + P + A+ G+P+R PRP P
Sbjct: 17 LGGRPPGTSCCTLSVQPLRTQAATAAGSPTRWAQPRPLP 55
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 29.9 bits (64), Expect = 9.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G PGR+G G+P RDG P RGE+ P G P
Sbjct: 861 GEPGRDG----NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 902
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 collagen
protein.
Length = 1466
Score = 29.9 bits (64), Expect = 9.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G PGR+G G+P RDG P RGE+ P G P
Sbjct: 1008 GEPGRDG----NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 1049
>X06700-1|CAA29886.1| 517|Homo sapiens alpha1 (III) collagen
protein.
Length = 517
Score = 29.9 bits (64), Expect = 9.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G PGR+G G+P RDG P RGE+ P G P
Sbjct: 59 GEPGRDG----NPGSYGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 100
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 29.9 bits (64), Expect = 9.3
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAG 367
G GREGA A G P RDG P RGE+ A P G
Sbjct: 586 GESGREGA----PAAEGSPGRDGSPGAKGDRGETGPAGPPGAXG 625
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 29.9 bits (64), Expect = 9.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G PGR+G G+P RDG P RGE+ P G P
Sbjct: 1008 GEPGRDG----NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 1049
>AL606970-2|CAI14850.1| 774|Homo sapiens RP11-503C24.7 protein.
Length = 774
Score = 29.9 bits (64), Expect = 9.3
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +2
Query: 239 APGRE---GALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRPA-TCLQS*GGLQ 406
APGRE G Q RGAGRG P + G + G P +P+ +C+ +Q
Sbjct: 383 APGREDEGGPAQSRGAGRGGPQQQG---YMPLEGPQQSGSLPEEGSKPSNSCVLRETMVQ 439
Query: 407 VADTSVAGQ 433
+ +S A Q
Sbjct: 440 ASPSSKAQQ 448
>AK126656-1|BAC86631.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ44700 fis, clone BRACE3016167. ).
Length = 146
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 235 WSPWSRRRITVKRSWARCPYARWCSAPTGYSW*KLGSRTASSCWTTSNVPSKL 393
W+ + RR++ +WA W P G S LGS W+ S+ PS +
Sbjct: 22 WTCQTSRRVSSDPAWA----VEWIELPRGLSLSSLGSARTLRGWSRSSRPSSV 70
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 29.9 bits (64), Expect = 9.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 236 GAPGREGALQ*RGAGRGVPMRDGVPHQLATRGESSEAVQPPPAGRP 373
G PGR+G G+P RDG P RGE+ P G P
Sbjct: 1008 GEPGRDG----NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 1049
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,102,740
Number of Sequences: 237096
Number of extensions: 2269525
Number of successful extensions: 11612
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 10688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11549
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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