Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4i03
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 29 0.64
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 29 0.84
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.9
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 1.9
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 27 2.6
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 3.4
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 4.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.5
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 26 5.9
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 26 5.9
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.9
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 7.9
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 7.9
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 523 EREVIAEKLFVGGSDEEDENRSDSAAPRGDVEYDDDNEELESDADDFIVDDDGR 684
E + F+ GSD ED SDS G+ DDD E + D +V + G+
Sbjct: 787 ENKYPRSNFFINGSDREDF--SDSEEEDGNDSSDDDRGFAEEEYSDGLVLNHGK 838
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 565 DEEDENRSDSAAPRGDVEYDDDNEELESD 651
DEE+E D GD E +++N+EL S+
Sbjct: 251 DEEEEEDDDENNDEGDDEDENENDELRSE 279
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 562 SDEEDENRSDSAAPRGDVEYDD-DNEELESDADDFIVDDDG 681
SD ED++ SDS+ + +D D+ SD+D +DG
Sbjct: 277 SDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDG 317
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 568 EEDENRSDSAAPRGDVEYDDDNEELESDADDFIVD 672
E++ N + +EYD+D EE E D D+ +D
Sbjct: 495 EDNSNFHEPELYESGLEYDEDEEEDEEDVDEDELD 529
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 598 APRGDVEYDDDNEELESDADDFIVDDDGR 684
A R DV Y DDN +L + +D++V D R
Sbjct: 565 AGRADVFYIDDNIKLSLNLNDYVVVDADR 593
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 523 EREVIAEKLFVGGSDEEDENRSDSAAPRGDVEYDDDNEELESDA 654
ER I E LFV GSDEE P +E ++NE + D+
Sbjct: 277 ERYQIPEHLFVPGSDEEMNEE-----PSKPIEQTENNEVSQQDS 315
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 568 EEDENRSDSAAPRGDVEYDDDNEE 639
EE+ NR D +P G V D+ EE
Sbjct: 1250 EEETNRGDETSPEGTVGEDEVEEE 1273
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 562 SDEEDENRSDSAAPRGDVEYDDDNEELESDADD 660
S + E+ SDS++ GD + D+E S D+
Sbjct: 204 SSSDSESSSDSSSESGDSDSSSDSESESSSEDE 236
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 565 DEEDENRSDSAAPRGDVEYDDDNEELESDADD 660
D +EN ++ A + E ++D+EE E D D+
Sbjct: 98 DNVEENEEEADANEEEEEDEEDDEEDEEDEDE 129
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 583 RSDSAAPRGDVEYDDDNEELESDADDFIVDD 675
RS S++ +G D+DNE+L S DD DD
Sbjct: 75 RSASSSEKGS---DEDNEKLGSSEDDEFDDD 102
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 613 VEYDDDNEELESDADDFIVDDDGRPXA 693
VE DDD+EE D+ + DDDG A
Sbjct: 250 VEVDDDDEE----EDEVVTDDDGTSNA 272
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 562 SDEEDENRSDSAAPRGDVE-YDDDNEELESDADD 660
SD+ED+N S D+E +D N+ + DAD+
Sbjct: 113 SDDEDDNGKYSKLRYEDIEGQEDTNQANDLDADE 146
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +1
Query: 568 EEDENRSDSAAPRGDVEYDDDNEELE 645
+E +++S++ + DV+YD+D ++L+
Sbjct: 158 QEIDSQSETVSISSDVDYDEDRKDLK 183
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 520 LEREVIAEKLFVGGSDEEDENRSDSAAPRGDVEYDDDNEELE 645
++ E++AE G D++DEN + +E DD EE +
Sbjct: 727 IDEEIMAE--LRGDEDDQDENDQVTKVEEEHMEDDDSVEEFD 766
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 583 RSDSAAPRGDVEYDDDNEELESDADDFIVDDDG 681
++ A P D Y DD E DA I +DG
Sbjct: 283 KNTEALPNNDSSYPDDAESFMHDAYLLIPSEDG 315
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 526 REVIAEKLFVGGSDEEDENRSDSAAPRGDVEYDDDNEELESDADDFIVDDDG 681
R ++AEK V + + +N AP + D++ EE E+D + D++G
Sbjct: 143 RSILAEKPRVTRFNIQWDNPDFDDAPPVQPDADEEEEEEEADEMEEEFDEEG 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,893
Number of Sequences: 5004
Number of extensions: 16339
Number of successful extensions: 112
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -