Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4i03
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 607 GDVEYDDDNEELESDADDFIVDDDGRP 687
           G+V+ DDD++  + D DD +   +G+P
Sbjct: 387 GEVDEDDDDDG-DDDDDDDVEAANGKP 412


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 610 DVEYDDDNEELESDADDFI 666
           D+EYDD   EL +  +D I
Sbjct: 298 DMEYDDIKTELSTGMNDDI 316


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 520 LEREVIAEKLFVGGSDEEDENRSDSAAPRGDVEYDDDNEELESDADDFIVDDD 678
           ++RE++       G D++ + R    +   D   D+D  E  S A D +  +D
Sbjct: 679 IKRELVDAPADQEGDDDQVDEREYPESHGHDSGQDEDMAEDLSMAPDIMTPED 731


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 547 LFVGGSDEEDENRSDSAAPRGDV 615
           ++ GGSD     RS+S    GD+
Sbjct: 35  IYSGGSDWRVAGRSESVVIPGDI 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,712
Number of Sequences: 438
Number of extensions: 1185
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)