Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4i01
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    34   0.020
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    29   0.75 
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    28   1.3  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    28   1.3  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    27   4.0  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   5.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.3  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.3  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    26   7.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   9.2  

>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +3

Query: 375 AEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISL 554
           ++  + ++GG     G  K      +    W+P      + S VL     + VT R +  
Sbjct: 25  SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84

Query: 555 INDHYGFDHYLLKTPACDLVSV 620
           I+   G D YL+K+    L S+
Sbjct: 85  IDKEGGLDEYLVKSTPSRLKSL 106


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 694 KSRWKSMRSTKHIYHHIRLKKIEMVWADM 780
           K  W+  R T+++++ +  KK EMVWA +
Sbjct: 303 KLLWEQSRETENLHNLLEQKKGEMVWAQV 331


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 332 FTSQFVAFPLPFLRNEMYSCWLQYLPLTPKFFISRW 225
           F + F    + F  +E+YS +  YL  +  FF  RW
Sbjct: 274 FWTNFEIAKVDFWESEVYSKYFDYLDKSGNFFYERW 309


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 313 ATN*LVKLI-RYKIFLFLLNSPLKSMRGYGEEKLWLKVSKS 432
           A++ LVKL+   KI+ +LL  P +S R     + W+KV +S
Sbjct: 109 ASSELVKLLSETKIYKYLLLKPARSFRLLTSNEEWIKVPES 149


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -3

Query: 422 TFNHSFSSPY-PLID--FSGEFKRNRNILYRIS-FTSQFVAFPLPFLRNEMYSCWLQYLP 255
           T   SFSS    +ID  +S E        Y +  F S F      F RNE Y  + + + 
Sbjct: 248 TVGLSFSSHLNAMIDSSYSAETSSMEGESYNMCHFWSNFEIANFKFFRNEQYENFFRTMD 307

Query: 254 LTPKFFISRW 225
            T  F+  RW
Sbjct: 308 ATGGFWTERW 317


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 192 GRFEIGIASELPPAYKKFWREWKVLKPAAVHFVP 293
           GR  IG A  L    K     W++LK  +VH+VP
Sbjct: 91  GRLHIGHA--LNKILKDIINRWQLLKGRSVHYVP 122


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 351  IPIPLKFPAEINEGIWGGEAVVKG 422
            I +PL   AEI +G+   EAV KG
Sbjct: 1890 IIVPLAAGAEIRQGLTASEAVAKG 1913


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 311 FPLPFLRNEMYSCWLQYLPLTPKFFI 234
           FP P LR +  + W++ L   P F I
Sbjct: 222 FPTPLLRQKAANAWIEVLSKLPYFHI 247


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 416 NHSFSSPYPLIDFSGEFKRNRNILYRISFTSQFVAFPLPFLRNEMYSC 273
           NH F+S   +  F  E KR  +I    +FT  F   P+  + +E   C
Sbjct: 120 NHEFASINRIYGFYDECKRRYSIKLWKTFTDCFNCMPVAAVIDEKIFC 167


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 567 YGFDHYLLKTPAC-DLVSVLALKLKKQILTELMNGCPRHAYDPKKQM 704
           Y FD+ L+   A   LVSVLA   +KQ L+  +N     + + K+ +
Sbjct: 497 YEFDNALIFYKASISLVSVLAPAAQKQFLSNYLNSIQGFSTETKEDL 543


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 468 VPVLKRTVVRSEVLNTHLSVTVTDRTISLIND 563
           VP+LKR + +       L+V +TD    L+ D
Sbjct: 257 VPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,632
Number of Sequences: 5004
Number of extensions: 69594
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)