Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4i01
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0788 - 21523998-21524412,21525421-21525620                       40   0.002
02_01_0243 - 1601977-1602834,1602857-1603063                           31   1.4  
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004...    30   2.4  
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437...    30   2.4  
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152...    29   3.1  
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469...    29   4.1  
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402...    28   7.2  

>07_03_0788 - 21523998-21524412,21525421-21525620
          Length = 204

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = +3

Query: 390 GIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDHY 569
           GI+ G  +  G +  +D   +    W P ++   + S + + H+ V VT   +  I+   
Sbjct: 47  GIYAGRHIQFGNKVSEDGGNKSRRTWKPNVQEKRLFSYIHDRHIRVKVTTHALRCIDKAG 106

Query: 570 GFDHYLLKTPACDLVSVLALKLKKQI 647
           G D YLLKTP   + + + +  K +I
Sbjct: 107 GIDEYLLKTPYNKMDTEMGVAWKAKI 132


>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 645 ILTELMNGCPRHAYDPK-KQMEIYEEYKTYLSSYTPE 752
           +L   MNGCP   YD K K+M   E   +Y   Y PE
Sbjct: 302 VLLVAMNGCPSFLYDTKGKRMVTGELLSSYQRFYLPE 338


>07_03_1192 +
           24698355-24698433,24699312-24699391,24700027-24700483,
           24700641-24700794,24700878-24701155,24701225-24701517
          Length = 446

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = -3

Query: 521 EMSIENFRSYYSSLQYWHPVVRYPASSIITLLETFNHSFSSPYPLID 381
           ++++ NF +Y  +   W+ V ++P+   +T + +FN+   +PY +I+
Sbjct: 305 KITVTNF-NYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLNPYGVIN 350


>01_06_0705 +
           31342236-31342415,31343086-31343391,31343555-31343796,
           31343927-31344122,31344419-31344602,31344984-31345147,
           31345454-31345981,31346530-31346630,31347619-31347634,
           31347834-31347941,31348028-31348078,31349059-31349100,
           31349442-31349541,31350039-31350256,31350367-31350807,
           31350916-31351043,31351131-31351992
          Length = 1288

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/89 (25%), Positives = 36/89 (40%)
 Frame = +3

Query: 300 GKWKRDELTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVL 479
           G WK DE   ++  I    +PL F  +I      GE  +      +  +R +PH W P  
Sbjct: 191 GSWKNDEAATKSLAIDGYSVPL-FKVKIT----SGELFL-----HESVKRAIPHSWDPSA 240

Query: 480 KRTVVRSEVLNTHLSVTVTDRTISLINDH 566
             + + +   +   SVTV  +    I  H
Sbjct: 241 LASFIENYGTHIITSVTVGGKDEVYIKQH 269


>05_05_0339 +
           24213179-24213821,24214402-24214623,24215035-24215282,
           24215385-24215524,24215579-24215753
          Length = 475

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +3

Query: 360 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 533
           PLK    + E +W  + V+ G    + R     +  YW   ++  V+ S       S+  
Sbjct: 141 PLKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDP 200

Query: 534 TDRTIS 551
             R I+
Sbjct: 201 VPRIIT 206


>01_06_1031 -
           33945681-33945822,33946502-33946641,33946748-33946995,
           33947355-33947576,33948188-33948839
          Length = 467

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
 Frame = +3

Query: 360 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 533
           PLK    + E +W  + V+ G    D R     +  YW   +   ++ S       S+  
Sbjct: 144 PLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDP 203

Query: 534 TDRTIS 551
             R I+
Sbjct: 204 LPRIIT 209


>01_07_0128 +
           41238510-41239146,41239420-41239461,41240076-41240297,
           41240909-41241156,41241296-41241435,41241904-41242027
          Length = 470

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
 Frame = +3

Query: 360 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 533
           PLK    + E +W  + VV G    + R     +  YW   +   V+ S       S+  
Sbjct: 139 PLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISVPVIISLAKGIEASLDP 198

Query: 534 TDRTIS 551
             R I+
Sbjct: 199 IPRIIT 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,752,334
Number of Sequences: 37544
Number of extensions: 398172
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)