Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4i01
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical ...    97   9e-21
AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine r...    31   0.70 
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical
           protein T25D3.2 protein.
          Length = 310

 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
 Frame = +3

Query: 210 IASELPPAYKKFWREWKVLKPAAVHFVPQEGKWKRDELTGETYPIQNIPIPLKFPAEINE 389
           +   LP  YK  + E  +     VH+ P   ++  D        ++  PI      E ++
Sbjct: 41  VVHRLPEHYKTRYWETILSDKTPVHYRPPTSRFAHDSFKNVEIELEENPIIGIRTPEGDD 100

Query: 390 GIWGGEAVVKGFQKRDD--RRRRVPHYWVP-----VLKRTVVRSEVLNTHLSVTVTDRTI 548
           G+WGGE VVKG+ +     +++ +P YWVP      LK  V+ SE+L+ ++ VTVT+R +
Sbjct: 101 GLWGGERVVKGWIESAPYTKKKILPRYWVPKLFFPALKNVVLYSEILDKYIKVTVTERAM 160

Query: 549 SLINDHYGFDHYLLKTPACDLVSVLALKLKKQILTELMNGCPRHAYDPKKQMEIYEEYKT 728
            LI++H+G D+Y+L++   DL S  A  LK+++L  L         D KK   I E+Y  
Sbjct: 161 RLIDEHFGLDYYILESKEIDLDSKFANSLKREMLLTLTTESYYEENDEKKAY-IKEKYAD 219

Query: 729 YL 734
           ++
Sbjct: 220 FV 221


>AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 62 protein.
          Length = 317

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +3

Query: 225 PPAYKKFWREWKVLKPAAVHFVPQEGKWKRDELTGETYPIQNIPIPLKFPAEINEGI 395
           P  Y+ FW  W +L    V F     K+  D    E Y +    I + FP  +++ I
Sbjct: 131 PYQYENFWSRWNLLVFLVVCFFSHLPKYLWDGFLYEVYIVNGQLICINFPTTLDQAI 187


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 237 KKFWREWKVLKPAAVHFVPQEGKWKRDELTGETYPIQNI 353
           K F  E KV+ P  VHFV +    K +E+TGE   ++ +
Sbjct: 422 KPFNIEEKVIFPVEVHFVSKIRDEKTEEITGEKNVVKTL 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,439,342
Number of Sequences: 27780
Number of extensions: 364584
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)