Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h20
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    35   0.075
01_05_0397 + 21753095-21753814                                         29   2.8  
11_06_0271 - 21804629-21805836,21805997-21806015                       29   3.7  
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239...    28   6.5  
11_01_0438 - 3349506-3351239                                           28   8.6  
07_03_0607 + 19916946-19917479,19917543-19918010,19918092-199184...    28   8.6  
02_05_1338 + 35790726-35791862                                         28   8.6  

>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 34.7 bits (76), Expect = 0.075
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -3

Query: 411 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVSRSSRNAVQNFHRQN 235
           +R + D GVG E++   G   I+G+  +Q STD+S+++ +++  + R   +  Q      
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKREHPDDDQCIVNDR 449

Query: 234 VAQVERVEVNRILGVAF 184
           V    R++V R  G  +
Sbjct: 450 VK--GRLKVTRAFGAGY 464


>01_05_0397 + 21753095-21753814
          Length = 239

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 328 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 438
           +D N + ++H    +++  +TA +DS  V SC VC +
Sbjct: 8   VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44


>11_06_0271 - 21804629-21805836,21805997-21806015
          Length = 408

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 349 SQHTCRVVELASNTAIADSAKVKSCAVCNKDNCNGAGSISFSLPLATFALIATYF 513
           S   C V  ++S T       ++S  VC     +G+  I+F       A+++TYF
Sbjct: 183 SDSMCIVAAISSRTLALWHPGMRSWCVCRSFGIDGSADIAFYQGRIYMAMVSTYF 237


>08_02_1417 -
           26922775-26922986,26923102-26923291,26923816-26923928,
           26924032-26924112,26925329-26926661
          Length = 642

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -2

Query: 148 SSYPVHCYIGST*CNNLFRIALVEQRRRMLHFLP 47
           + + ++CYIGS+  +   +  +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170


>11_01_0438 - 3349506-3351239
          Length = 577

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 268 GAPRYCHKIVMKSGTVV---RTCLDVNPNDSQHTCRVVELASNTAIAD 402
           GAPR  +++ +++GT     RTC  + P D+     + E+    A+ D
Sbjct: 308 GAPRGAYRLALRNGTFAPADRTCGRIAPTDANPVWAMEEMPLPRAMGD 355


>07_03_0607 +
           19916946-19917479,19917543-19918010,19918092-19918479,
           19919025-19919076,19919294-19919333
          Length = 493

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 689 MKNELRFTINSLEFFSVSTRLGAERTLFGTPKPTFI 582
           M N+LRF +  L+   V +    +R L G P  T +
Sbjct: 244 MANQLRFNLYDLDLSEVHSNSALQRLLIGMPNRTIL 279


>02_05_1338 + 35790726-35791862
          Length = 378

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 309 SALH-DDLVTVSRSSRNAVQNFHRQNVA 229
           S LH DDLV     S  AV  FH  N+A
Sbjct: 176 SLLHQDDLVLAGLESEKAVSGFHADNIA 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,808,925
Number of Sequences: 37544
Number of extensions: 406585
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)