Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h16
         (666 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    26   0.93 
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    25   2.1  
EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    24   3.7  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    24   3.7  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   6.5  

>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.93
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 457 FLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMD 573
           F V L T    YS+   EW+PPA      + D++++  D
Sbjct: 124 FEVTLATKATIYSEGLVEWKPPAIYKSSCEIDVEYFPFD 162


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 526 PQPFKVQSDL---QWYLMDPDAYDQFLVGIGTGVALQVWQ 636
           P P  ++ D    Q YL DP+A    +      V L+VWQ
Sbjct: 842 PHPLLIKEDARCHQRYLADPEASRAVIRREERAVTLEVWQ 881


>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 431 LFVAFTASAAFCGLLYSRKMYPVVSPFSV 345
           +F AFTAS  +CG  +  +  PV + F +
Sbjct: 426 VFAAFTASYFWCGQGWELEDNPVSTAFEI 454


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 467 FTKNVCCLSNLQLFVAFTASAAFCGLLYSRK 375
           F+ ++CC  ++   VAFT    F  +LY  K
Sbjct: 197 FSSSLCCFLSVWFVVAFTVE-RFIAVLYPLK 226


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 494 QIFQKNGSHRHLNH 535
           +++Q NG H H NH
Sbjct: 201 ELYQLNGVHNHSNH 214


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.317    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,834
Number of Sequences: 2352
Number of extensions: 13484
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)