Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h13
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    27   9.7  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   9.7  

>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -2

Query: 342 RSRR*LMQQTPKSRIGAVMTASMRMIAPVFSTSTSRHFSKARGFIPILILSTRSEVVN 169
           R+ R L Q  PK    A+   + R +AP    S +  FS   GF  +   ST  EVVN
Sbjct: 809 RAERLLFQLLPKHV--AIELKAGRTVAPKMYDSATVMFSDIVGFTKLCSASTPIEVVN 864


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 616 HTPADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQE 494
           + P   ++ VP Y       P TE     G ++  W SV+E
Sbjct: 25  YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 567  CAPEYPGTASCKSAGVCSSAGQQMD 641
            C P+ PG + C +AG C S  +  D
Sbjct: 1907 CDPDDPGFSCCGAAGYCGSGKEYCD 1931


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 456 TLPVPSNRNTLSHSCTERHAQLFLPP 533
           TLPV S   T   +C +R  QL +PP
Sbjct: 41  TLPVTSEHKTAHDACIKRLEQLEIPP 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,883,485
Number of Sequences: 27780
Number of extensions: 327951
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)