Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h11
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    71   2e-13
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.40 
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    27   2.8  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.7  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   6.5  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   6.5  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   8.6  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 59/191 (30%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
 Frame = +3

Query: 132 YSFKGIPYAKPPVGELRFAIPQPPES-WKGVRDATKDCNICAQ--VDKLTGNVVG----- 287
           + F GI YAKPPVG+LR+  P   E  +    D  +   IC Q   +     V       
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKY 78

Query: 288 DEDCLYLNVYTPKLPTSSSELLPVMXXXXXXXXXXXNGTDTAKHGPDFL----IEKDVVI 455
           DEDCL+LN++ P      +E  PV+           N     +  P  L         ++
Sbjct: 79  DEDCLFLNIWVPA-GEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFIL 137

Query: 456 VSFNFRIGILGFLA----LGCKDAPGNMGLRDQVMALKWVQRNISKFGGDPNNVTIFGIS 623
           VS   R+ + GFLA    L       N G  DQ + L+W  ++I  FGG+  N+ + GIS
Sbjct: 138 VSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGIS 197

Query: 624 AGGSSVEYLLL 656
           AG  S  + L+
Sbjct: 198 AGSYSALFQLI 208


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +3

Query: 126 QYYSFKGIPYAKPPVGELRFAIPQPP--ESWK----GVRDATKDCNICAQ 257
           Q+Y+     YA PP G  R + P PP    +K    G +D+ + C  CA+
Sbjct: 114 QFYARPQSSYAPPPSGRPRISYPYPPGYMCYKCHNTGYKDSGRPCGRCAR 163


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = -1

Query: 176 FADRRFR-IRNSFETIILDVLNSCCHISFQFTFINVYNWFRHYKYLQYRLLTQPQH 12
           F  R+ R I N    + L   N    +  Q  +IN  NWF  Y + QY       H
Sbjct: 166 FPIRKHRLIANKNYYLFLFKFNRKLALELQRAYINTMNWFYLYHFEQYSRFLDKVH 221


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 304 TSMFTRPSFPPPALNSYPLCSSFMEVVSFLGTAPTLPNTVQI 429
           +S  +R ++PP  ++    CS F+E    +  A T+ + VQ+
Sbjct: 256 SSYGSRQTYPPSGIDDSSYCSMFVETEFIVEIAQTVFSFVQV 297


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 549 ALKWVQRNISKFGGDPNNVTIFGISAGGS 635
           AL +   N    G +PN + + G SAGG+
Sbjct: 157 ALLYCYENADTLGINPNKIAVGGSSAGGN 185


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 617 SKNCNIIWVSAKF 579
           +KNCN IW S+KF
Sbjct: 44  AKNCNTIWDSSKF 56


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 218 GQRCDQRLQHLRSGRQINRKRSWRRGLLVPQCLHAQASHLQL*TLTRYVLHSWRWFH-FW 394
           G RC++ L +L +   +N  R WR  L   + L A    +      R ++ +++W H F+
Sbjct: 107 GGRCERLLPYLVASNPVNYGRPWR--LNCAEALAACMYIVGYPNEARLLMDNFKWGHSFF 164

Query: 395 E 397
           E
Sbjct: 165 E 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,078
Number of Sequences: 5004
Number of extensions: 76522
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)