Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4h11
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 33 0.18
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 32 0.42
09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122 31 0.96
06_01_0508 - 3674787-3675140,3675257-3675566,3675672-3675806,367... 31 0.96
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 31 1.3
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 30 2.2
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 29 3.9
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 29 3.9
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 29 3.9
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168... 29 5.1
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 29 5.1
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 28 6.8
08_01_0048 + 335868-336682,338382-340386 28 6.8
06_03_1188 + 28269231-28270358 28 9.0
04_03_0467 + 16247207-16247361,16247996-16248192,16248273-16248289 28 9.0
04_01_0360 - 4720997-4721812 28 9.0
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 519 GNMGLRDQVMALKWVQRNISKFGGDPNNVTIFGISAG 629
G+M + D + +V NI+ +GGDPN + + G SAG
Sbjct: 191 GDM-VSDASQGISYVCNNIASYGGDPNRIYLVGQSAG 226
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 519 GNMGLRDQVMALKWVQRNISKFGGDPNNVTIFGISAGGSSVEYLLLSPLSRGLFHKAIAQ 698
G+M + D + +V NI+ +GGDP + + G SAG LL H+AI +
Sbjct: 199 GDM-VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGAHIAACTLL--------HQAIKE 249
Query: 699 SG 704
SG
Sbjct: 250 SG 251
>09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122
Length = 370
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 296 ILVSNYVSC*FV--DLSANVAIFGRISDPFPRFWWLWYSKP 180
+L +N C F ++ +NV+I DP+ R+WW S P
Sbjct: 178 VLAANQSMCLFDRRNMGSNVSILRYPDDPYDRYWWKMRSDP 218
>06_01_0508 -
3674787-3675140,3675257-3675566,3675672-3675806,
3675891-3676100,3676193-3677359,3677397-3677587
Length = 788
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Frame = +3
Query: 552 LKWVQRNISKFGGDPNNVTIF-------GISAGGSSVEYLLLSPLSRGLFHKAIAQSGS 707
L W+ + + + GGD + T F G+ GG YL+ PL G F ++ G+
Sbjct: 91 LWWMAQRMGEKGGDVPHETQFLLVESKAGVDGGGGDASYLVFLPLVEGAFRASLQGGGA 149
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +3
Query: 429 FLIEKDVVIVSFNFRIGILGFLALGCKDAPGNMGLRDQVMALKWVQRNISKFGGDPNNVT 608
FL + ++ N+R G LGF + PGN+G +D L + I K D + V
Sbjct: 556 FLYSQGYNLLVVNYR-GSLGFGEEALQSLPGNIGSQDVNDVLTALDFVIKKGLIDASKVA 614
Query: 609 IFGISAGGSSVEYLL 653
+ G S GG +L+
Sbjct: 615 VVGGSHGGFLTTHLI 629
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 528 GLRDQVMA-LKWVQRNISKFGGDPNNVTIFGISAGGS-SVEYLLLSPLSRGLFHKAIA 695
GL D+++A L WV+ N+ GDP + + +G + S+ ++ + L+ GL +A
Sbjct: 76 GLWDEILAALTWVEGNMGAVLGDPRRPLLLSVRSGAAVSMPGMMDTVLNLGLNDHVVA 133
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 579 KFGGDPNNVTIFGIS-AGGSSVEYLLLSPLSRGLFHKAIAQS 701
K DP ++ F IS AG SS Y L+SP G+F +AIA +
Sbjct: 248 KIAPDPAWLSGFQISSAGPSSPTYNLVSPNPFGIFKEAIAST 289
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 552 LKWVQRNISKFGGDPNNVTIFGISAGGSSVEYLLLSPLSR 671
+ +V + +GGDPN + + G SAG LL ++
Sbjct: 244 ISFVCETVGAYGGDPNQIYLMGQSAGAHIAACALLEQAAK 283
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +2
Query: 278 RSWRRGLLVPQCLHAQASHLQL*TLTRYVLHSWRWFHFWER 400
R W+ P C H Q + L L RY W W R
Sbjct: 741 RGWQNNSFCPLCRHTQETALHLLAECRYTRKIWAALSDWTR 781
>06_03_1168 -
28114656-28114721,28114800-28114889,28115139-28116877,
28117146-28117227,28117794-28117865,28119412-28119453,
28120352-28120401,28121253-28121372,28121635-28121707,
28121828-28122100,28122413-28122517,28122730-28122859,
28123106-28123356,28123787-28123993,28124185-28124455,
28124808-28124914
Length = 1225
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 177 LRFAIPQPPESWKGVRDATKDCNICAQVDKLTGNV 281
L +IPQ P W+ ++D + +C+ +D L G+V
Sbjct: 631 LTCSIPQFPAKWQSIKDKLR--QLCSGLDSLCGSV 663
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 168 VGELRFAIPQPPESWKGVRDATKDCNICAQVDKLTG 275
VG L +P P W GVR + C I + K G
Sbjct: 474 VGRLMLPLPSPKRMWIGVRLISSACGIIFPIIKAEG 509
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 134 IILDVLNSCCHISFQFTFINVYNWFRHYKYLQY 36
I +D +N+ H +F+ ++ WF KYL Y
Sbjct: 185 IYIDFMNNMGHCNFELVPSWLFTWFPPLKYLMY 217
>08_01_0048 + 335868-336682,338382-340386
Length = 939
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 144 GIPYAKPPVGELRFAIPQPPESWKGVRDA 230
G+P A VG L P+ E WK +RD+
Sbjct: 365 GLPLAIVTVGSLLACRPRTMEEWKSIRDS 393
>06_03_1188 + 28269231-28270358
Length = 375
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 192 PQPPESWKGVRDATKDCNICAQVDKLTGNVVGDEDCLYLNVY 317
P PP + V DA ++C +C +D+L VV C +V+
Sbjct: 307 PAPPAKRRKVFDAGEECPVC--LDELEDGVVAWPGCSVAHVF 346
>04_03_0467 + 16247207-16247361,16247996-16248192,16248273-16248289
Length = 122
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 278 RSWRRGLLVPQCLHAQASHLQL*TLTRYVLHSW 376
R W G + P C H Q + + L RY W
Sbjct: 62 RDWPNGSIYPLCRHCQETAIHLLAECRYTRRIW 94
>04_01_0360 - 4720997-4721812
Length = 271
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 215 RGQRCDQRLQHLRSGRQINRKRSWRRG 295
RG+R +RL+ + +++ R+R WR G
Sbjct: 102 RGRRKQRRLETVTRRQRLRRRRQWREG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,578,808
Number of Sequences: 37544
Number of extensions: 522051
Number of successful extensions: 1435
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -