Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h08
         (295 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    26   0.096
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   2.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   6.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    20   6.3  

>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 25.8 bits (54), Expect = 0.096
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 192 CNSRKPNEGRRRNRFVPSLLSDVWN 118
           C+SR+    RR  R+V +   DVWN
Sbjct: 67  CDSRQVANARRIARYVQTKHPDVWN 91


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 57  QEPFIDKPPKLQNTLLLTARHSTHPTV 137
           Q PFID P  +  TLL +     +P +
Sbjct: 292 QSPFIDGPVFVILTLLYSLNSCVNPWI 318


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.8 bits (39), Expect = 6.3
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 84  KLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVS 203
           KLQ+  LL+ RH     +    S    C     +C  +V+
Sbjct: 471 KLQSFPLLSQRHQIDAKMFCNESSVSNCENEYCECTHVVN 510


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 19.8 bits (39), Expect = 6.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 236 IVYFYYCFV 262
           I YFYY F+
Sbjct: 238 IYYFYYAFI 246



 Score = 19.4 bits (38), Expect = 8.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +2

Query: 236 IVYFYYCFV 262
           + YFYY F+
Sbjct: 113 VYYFYYAFI 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,759
Number of Sequences: 336
Number of extensions: 1086
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5216393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)