Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h08
         (295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 145 NEAISSPALVWLSTV 189
           + AIS PA+VW   V
Sbjct: 174 SSAISFPAIVWWRAV 188


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 191  VTVESQTRAGDEIASFLRYCR 129
            + V + TR GD + + + YC+
Sbjct: 1188 IQVLAFTRVGDGVPTTVTYCQ 1208


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 191  VTVESQTRAGDEIASFLRYCR 129
            + V + TR GD + + + YC+
Sbjct: 1184 IQVLAFTRVGDGVPTTVTYCQ 1204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,578
Number of Sequences: 438
Number of extensions: 1357
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)