Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h07
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O15804 Cluster: Aspartate transcarbamoylase; n=6; Plasm...    43   0.009
UniRef50_Q176A5 Cluster: B-cell lymphoma/leukaemia 11A extra lon...    42   0.015
UniRef50_Q4RNV0 Cluster: Chromosome 2 SCAF15010, whole genome sh...    36   1.0  
UniRef50_Q0GYN6 Cluster: Hypothetical membrane lipoprotein precu...    36   1.0  
UniRef50_Q5BZU8 Cluster: SJCHGC06901 protein; n=1; Schistosoma j...    36   1.0  
UniRef50_Q4L3J3 Cluster: Similar to DNA-dependent RNA polymerase...    34   3.1  
UniRef50_Q16LV1 Cluster: Putative uncharacterized protein; n=2; ...    34   3.1  
UniRef50_Q8T051 Cluster: LD28458p; n=2; Sophophora|Rep: LD28458p...    33   7.1  
UniRef50_Q3SE51 Cluster: PAZ and PIWI domain protein; n=2; Param...    33   9.4  
UniRef50_A0DAF7 Cluster: Chromosome undetermined scaffold_43, wh...    33   9.4  

>UniRef50_O15804 Cluster: Aspartate transcarbamoylase; n=6;
           Plasmodium|Rep: Aspartate transcarbamoylase - Plasmodium
           falciparum
          Length = 375

 Score = 42.7 bits (96), Expect = 0.009
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
 Frame = +3

Query: 126 NLNKKMNNVCSACLSNGRVLHSIENTIYSKFYIQFVYES-SSVN-ASEICLRICWECKAL 299
           N+NKK+N      L NGR +HS+ + + S++ + F + S  S+N   +I   I +     
Sbjct: 209 NINKKLNIAFVGDLKNGRTVHSL-SKLLSRYNVSFNFVSCKSLNIPKDIVNTITYN---- 263

Query: 300 LRKFEIFKQKAKSAFKFLTEGLDSLSINPFLLQSQLQIYHLHNYDYSDDVKHEDIIQEAD 479
           L+K   +   +   F  L EGL+ + I   +  +++Q     + D  +  K+  I+    
Sbjct: 264 LKKNNFYSDDSIKYFDNLEEGLEDVHI---IYMTRIQKERFTDVDEYNQYKNAFILSNKT 320

Query: 480 LEVKIEPVEHDEPETFVNDFVVDEDARP 563
           LE   +  +   P   VN+  V+ D+ P
Sbjct: 321 LENTRDDTKILHPLPRVNEIKVEVDSNP 348


>UniRef50_Q176A5 Cluster: B-cell lymphoma/leukaemia 11A extra long
           form, putative; n=1; Aedes aegypti|Rep: B-cell
           lymphoma/leukaemia 11A extra long form, putative - Aedes
           aegypti (Yellowfever mosquito)
          Length = 614

 Score = 41.9 bits (94), Expect = 0.015
 Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
 Frame = +3

Query: 129 LNKKMNNVCSACLS----NGRVLHSIENTIYSKFYI------QFVYESSSVNASEICLRI 278
           L+  + N+C  CLS    + R+ H   + I   F +      QF    +   +     +I
Sbjct: 10  LDMDVENMCRICLSQTDASERLFHIFSSAIVDGFLVAIPDVLQFCVNLTVSKSDGKPCKI 69

Query: 279 CWECKALLRKFEIFKQKAKSAFKFLTEGLDS-LSINPFLLQSQLQIYHLHNYDYSDDVKH 455
           C +CK+ L +F +FKQK +   K L E L S +  N     S L +  L +   SDD   
Sbjct: 70  CQKCKSQLLEFYLFKQKCQRTDKVLQEALGSPIKQN----DSDLLLASLRSPSVSDDNIM 125

Query: 456 EDIIQEADLEVKIEPVEHDEPET 524
            +I++ +      E    DEP T
Sbjct: 126 VEILESS---TNCEDTALDEPNT 145


>UniRef50_Q4RNV0 Cluster: Chromosome 2 SCAF15010, whole genome
           shotgun sequence; n=2; Clupeocephala|Rep: Chromosome 2
           SCAF15010, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 728

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
 Frame = -3

Query: 358 SVRNLKALLAFCLNISNLRNKALHSQQIRRQISDALTLELSYTN*M*NLL*IVFSIECNT 179
           S+ +++ L  F +++S+L +  L    I R      T+++S  N    L+  + +++ + 
Sbjct: 40  SIHDVRILTTFMISVSSLVSVRLRDALIDRAGHLLDTMDISNYNSPRRLVQFLRNVKHSH 99

Query: 178 RPLLRHAEHTLFIFLFKFEAFCVCLI-KLHQSFHLKNNDF 62
           RPLL      L   + + +A  +C+I  L+QS    N DF
Sbjct: 100 RPLLEKCNKILLCNVPRMDAENICIILGLYQSLQFNNCDF 139


>UniRef50_Q0GYN6 Cluster: Hypothetical membrane lipoprotein
           precursor; n=1; Mycoplasma arthritidis|Rep: Hypothetical
           membrane lipoprotein precursor - Mycoplasma arthritidis
          Length = 273

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
 Frame = +3

Query: 99  FIKQTQKASNLNKKMNNVCSACLSNGRVLHSIENTIYSKFYIQFVYESSSVNASEICLRI 278
           +I  T     L + +N++ S  L    +  +IE T Y+K + +F   +  V   +I +  
Sbjct: 95  WISLTNDYEKLFQDLNDLKSKILL---IEEAIEKTKYTKAWKKFDELAGKVTVFKIKISA 151

Query: 279 CWE-CKALLRKFEIFKQKAKSAFKFLTEGLDSLSINPFLLQSQLQIYHLHNYDYSDDVK 452
            WE  KA  + +E  K+KAKS F+ L      + +N   LQ+++ +  L+N    +++K
Sbjct: 152 SWEIIKAAKKVYEEQKEKAKSQFEKLLVAAQKV-LNE--LQTEVLVVDLYNQSEIENLK 207


>UniRef50_Q5BZU8 Cluster: SJCHGC06901 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC06901 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 173

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 183 LHSIENTIYSKFYIQFVYESSSVNASEICLRICWECKALLRKFEIFKQKAK 335
           ++++  TI S      +Y +S V +S I  R CW CK LL+  + F +  K
Sbjct: 37  MYNVNFTIASLSRYNCIYVTSHVYSSFISSRTCWNCKRLLKDLDFFCECGK 87


>UniRef50_Q4L3J3 Cluster: Similar to DNA-dependent RNA polymerase
           sigma subunit; n=2; Staphylococcus haemolyticus|Rep:
           Similar to DNA-dependent RNA polymerase sigma subunit -
           Staphylococcus haemolyticus (strain JCSC1435)
          Length = 196

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
 Frame = +3

Query: 333 KSAFKFLTEGLDSLSINPFLLQSQLQIY-HLHNYDYSDDVKHED----IIQEADLEV-KI 494
           K   KF + G+ +  I   + ++ ++IY  LH +D+S DV  E     I++    +  + 
Sbjct: 38  KLFIKFKSYGIQNEDIEDLVQETLIRIYLALHTFDFSTDVPFEHYLNCIVRSMRNDFWRR 97

Query: 495 EPVEHDEPETFVNDFVVD 548
           + +E D+ ++ +ND+V+D
Sbjct: 98  KYIETDKHDSIINDYVID 115


>UniRef50_Q16LV1 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 449

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 14/149 (9%)
 Frame = +3

Query: 105 KQTQKASNLNKKMNNVCSACLSNGRVLH-SIENTIYSKFYIQFVYESSSVNASEICLRIC 281
           +Q QK    +  +   C   L +   L  S +N  Y+  Y+ F         +   LRIC
Sbjct: 106 EQDQKCDEYSSTLCRACGQNLPDDPALSDSFQN--YAHMYLAFTNLQLHPRENPEELRIC 163

Query: 282 WECKALLRKFEIFKQ----------KAKSAFKFLTEGLDSLSI---NPFLLQSQLQIYHL 422
            +CK  L +FE  ++          + K   +   EG DS ++   NP + ++ +   + 
Sbjct: 164 PDCKNKLHEFEQLRETFINVHWRLLEVKPELRDNHEGFDSNAVVEKNPSINEAIVSDINS 223

Query: 423 HNYDYSDDVKHEDIIQEADLEVKIEPVEH 509
              D S +  +    ++ +  VK+EPV++
Sbjct: 224 LEQDVSQNDLYNQTTEQLESIVKVEPVDY 252


>UniRef50_Q8T051 Cluster: LD28458p; n=2; Sophophora|Rep: LD28458p -
           Drosophila melanogaster (Fruit fly)
          Length = 639

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 22/81 (27%), Positives = 44/81 (54%)
 Frame = +3

Query: 273 RICWECKALLRKFEIFKQKAKSAFKFLTEGLDSLSINPFLLQSQLQIYHLHNYDYSDDVK 452
           RIC EC+  L K  +F+Q+ + A K L + +  L +     +S++      +YD  D+++
Sbjct: 58  RICQECRYQLEKSFLFRQRCQWAEKKLRKHIRLLGLGK---RSRVFSKDPDDYD-EDELE 113

Query: 453 HEDIIQEADLEVKIEPVEHDE 515
            ED I   +++ K+  +E ++
Sbjct: 114 FEDSIAFIEVQDKVRKLEDEK 134


>UniRef50_Q3SE51 Cluster: PAZ and PIWI domain protein; n=2;
           Paramecium tetraurelia|Rep: PAZ and PIWI domain protein
           - Paramecium tetraurelia
          Length = 875

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +3

Query: 315 IFKQKAKSAFKFLTEGLDSLSINPFLLQSQLQIYH-LHNYDYSDDVKHEDIIQEADLEVK 491
           I   K  S F F  E        P   + Q+ ++  L++YDY  ++K   +I   DLE  
Sbjct: 154 IIGSKESSTFNFKLE-------KPIKFEEQVFLFLCLNSYDYYLEIKKVKVINMQDLE-N 205

Query: 492 IEPVEHDEPETFVNDFVVD 548
             P+E D+P  F N  + D
Sbjct: 206 PNPIEADKPLMFFNYLIKD 224


>UniRef50_A0DAF7 Cluster: Chromosome undetermined scaffold_43, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_43,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2374

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 321 KQKAKSAFKFLTEGLDSLSINPFLLQSQLQIYHLHNYDYSDDVKHEDIIQE 473
           KQ+ +S  + L   LD +      LQSQL        D  DDVK E+ IQ+
Sbjct: 375 KQQLQSDLRMLQSKLDQIQQEQLALQSQLTQKTKQLIDIHDDVKQEEQIQQ 425



 Score = 32.7 bits (71), Expect = 9.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 321 KQKAKSAFKFLTEGLDSLSINPFLLQSQLQIYHLHNYDYSDDVKHEDIIQE 473
           KQ+ +S  + L   LD +      LQSQL        D  DDVK E+ IQ+
Sbjct: 800 KQQLQSDLRMLQSKLDQIQQEQLALQSQLTQKTKQLIDIHDDVKQEEQIQQ 850


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,192,209
Number of Sequences: 1657284
Number of extensions: 9849220
Number of successful extensions: 26709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26693
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)