Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h07
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    31   0.17 
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    29   0.67 
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   2.1  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    27   3.6  

>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +3

Query: 429 YDYSDDVKHEDIIQEADLEVK--IEPVEHDE-PETFVNDFVVDE 551
           ++ SD    +D+I   + E    +  +EHDE P+TF ++F+ DE
Sbjct: 55  FENSDSENEKDLIDADEFEEAETLSDLEHDEEPQTFADEFIDDE 98


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
 Frame = +3

Query: 174 GRVLHSIENTIYSKFYIQFVYESSSVNASEICLRICWECKALLRKFEIFKQKAKSAFKFL 353
           G V H  E   + K Y   V   +++      +R+      L   FE  + +A ++F   
Sbjct: 170 GPVEHYEEAEAFVKEYGLPVIIKAAMGGGGRGMRVVRSADTLKESFERARSEALASFGDG 229

Query: 354 TEGLDSLSINPFLLQSQLQ------IYHLHNYDYSDDVKHEDIIQEA---DLEVKIEPVE 506
           T  ++     P  ++ QL       + HLH  D S   +H+ +++ A   DL+ KI    
Sbjct: 230 TVFIERFLDKPKHIEIQLMADKAGNVIHLHERDCSVQRRHQKVVEIAPAKDLDPKIRQAL 289

Query: 507 HDE 515
           +D+
Sbjct: 290 YDD 292


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 354 TEGLDSLSINPFLLQSQLQIYHLHNYDYSDDVKHE 458
           T   +SLS  P    S+ + YH H+ D S D  H+
Sbjct: 693 TASSNSLSNKPGFAHSESRNYHTHDEDNSSDDNHK 727


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +3

Query: 267 CLRICWECKALLRKFEIFKQKAKSAF---KFLTEGLDSLSINP 386
           CLRIC+  K L     +F  +  + F   +F+T G     INP
Sbjct: 86  CLRICYPEKQLKEILALFADEPSAPFSIHQFVTMGKTLCDINP 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,165
Number of Sequences: 5004
Number of extensions: 43454
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)