Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h07
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0486 + 4262065-4262346                                           29   2.8  
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     29   2.8  
04_04_0038 - 22312479-22313282                                         29   2.8  
09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532...    29   4.9  
07_03_0658 - 20366559-20367562,20367745-20367937                       28   6.5  
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    28   8.6  

>08_01_0486 + 4262065-4262346
          Length = 93

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -1

Query: 567 PPGARPHQLQSH*QRSLVRHVQQALF*LLSPPPG*CLRASHHQSSRSCVDDRFATVIAAK 388
           P    P  L    Q  L+RH ++ L  L SPP G  L +   +++   V+ R +T++AA 
Sbjct: 7   PASPPPSFLIGGAQAQLLRHREEMLLVLPSPPSGRQLPSEEEEAAPCAVNGR-STILAAA 65

Query: 387 TGLCSTSP 364
                T P
Sbjct: 66  DDSKPTRP 73


>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +3

Query: 330 AKSAFKFLTEGLDSLSINPFLLQSQLQIYHLHNYDYSDDVKHEDIIQEADLEVK 491
           A   F ++     S+    F   S+L+   LH+ D  + +KH+  + +  L++K
Sbjct: 233 ANGGFNYVKSNERSIEFYSFWYSSRLRYPGLHDQDVFNVIKHDPYVSDIGLKIK 286


>04_04_0038 - 22312479-22313282
          Length = 267

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 250 SMRQRSASESAGSVKLYYANLKYSNRKLKVLLNF*LKDWTR*A*TRFCCNHSCKSII 420
           ++  R AS +  +V  YY   K ++++  + L    KDW R A    C  H  K+++
Sbjct: 9   TLSSRRASSATSAVPSYYQKTKKASKENGLQLTSEKKDWKR-ATCSICLEHPHKAVL 64


>09_03_0034 +
           11751965-11752010,11752138-11752205,11753142-11753252,
           11753626-11753712,11753800-11754008,11754653-11754926,
           11756595-11757079,11758367-11758484,11758584-11758700,
           11758779-11758925,11759061-11759135,11759198-11759266,
           11759914-11760024,11760183-11760267,11760404-11760501,
           11760628-11760720,11760806-11760880
          Length = 755

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +1

Query: 208 IVNFTFNLYTKALASMRQRSASESAGSVKLYYANLKYSNRKLKVLLNF*LKDWTR*A*TR 387
           +VN +    TKALA     S   + G++  Y A L +SN  L   LN   K  +  A   
Sbjct: 127 VVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYY 186

Query: 388 FCCNHSCKSI 417
              NHS  ++
Sbjct: 187 HIVNHSATAV 196


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 102 IKQTQKASNLNKKMNNVCSACLSNGRVLHSIENTI 206
           I  T+  ++L +K+NN+C A  ++ R  H  E  I
Sbjct: 48  ITNTEHLTDLKRKLNNLCQASGADKRFFHHNEEMI 82


>03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,
            7712019-7712214,7712449-7712832,7712884-7714804,
            7714906-7714966,7715952-7716371
          Length = 1059

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +3

Query: 390  LLQSQLQIYHLHNYDYSDDVKHEDIIQEADLEVKIEPVEHDEPETFVNDFVVDEDA 557
            +LQS++++      D   +   EDI +  DLE KIE  E++      N   VDEDA
Sbjct: 865  VLQSKIEVLTAELDDERQN-HQEDITRYRDLEEKIERYENER-----NSMCVDEDA 914


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,965,842
Number of Sequences: 37544
Number of extensions: 260318
Number of successful extensions: 637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)