Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h07
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-1|CAB55091.2|  454|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL117202-1|CAB55091.2|  454|Caenorhabditis elegans Hypothetical
           protein Y47D3A.1 protein.
          Length = 454

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/74 (21%), Positives = 38/74 (51%)
 Frame = +3

Query: 99  FIKQTQKASNLNKKMNNVCSACLSNGRVLHSIENTIYSKFYIQFVYESSSVNASEICLRI 278
           F+KQT K +     + ++  +C+    ++H   N +++    + V E   V+   IC+  
Sbjct: 107 FLKQTMKITVFKIIIEDLEFSCIDR-EIIHLALNDLFTDSDYERVEEFIGVD--NICIAG 163

Query: 279 CWECKALLRKFEIF 320
           C EC+ +++  +++
Sbjct: 164 CGECRKMIQNCKVY 177


>Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical
           protein T03E6.3 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = +3

Query: 234 YESSSVNASEICLRICWECKAL----LRKFEIFKQKAKSAFKFLTEGLDSLSINPFLLQS 401
           +++   N S+ CL +CW  + +    LR ++I     +S      E L+ +      L  
Sbjct: 258 FDNGYSNISDECLEMCWNIRKVILRELRNYQIDGNCEESRLFETLESLEYIEKGERKLME 317

Query: 402 QLQIYHLHNYDYSDDVKHEDIIQEADL 482
           ++ I  +++    DD +  +I++E+ L
Sbjct: 318 EMLICEINDLRIHDDFR--EILKESKL 342


>U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical
           protein T27B1.2 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 363 LDSLSINPFLLQSQLQIYHLHNYDYSDDVKH 455
           LD+ S++  L+QSQ Q + +  Y YSDD +H
Sbjct: 266 LDTTSLDS-LMQSQNQNFLMQLYGYSDDGRH 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,171
Number of Sequences: 27780
Number of extensions: 250506
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)