Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4h05
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.071
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    30   0.12 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   2.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   2.0  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    24   6.2  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    24   6.2  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    24   8.2  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    24   8.2  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.071
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 208 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 309
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 132 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNRII 28
           Y    ES + D+ +  SH+ A +I Q  R+G R++
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRLL 97


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 286 FPCVPTQXFVDPIHLKICQYPHGGL 212
           F  +P Q F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 14   MSTTYIILLPFLLTCAIASAAECENATSLS 103
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 133 RSGXSPRLQXRSQPDPAFETC*HS*VRVHRADTGRSSNELD 255
           RS  S R       +P   +     +  H+AD+G S NE++
Sbjct: 11  RSSTSKRSVIDDDSEPELPSMTKEAIASHKADSGSSDNEVE 51


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 9   IKCRRLILFCYRFSS 53
           I+CR  + FC+RF S
Sbjct: 66  IQCRDFMFFCWRFQS 80


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 275 NAGEWGCSTWLVSSERLWRPDV 340
           N G+W   TW  +  R W  DV
Sbjct: 181 NTGDWIYDTWSDNELRTWLHDV 202


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 348 SSTTSGLHKRSEDTSQVLQPHSPAFQLSXLSIQ 250
           +S++SG   +   TSQ+++  SP+ + + L +Q
Sbjct: 25  ASSSSGSFSKKSSTSQLVRTGSPSVEPTALYLQ 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,703
Number of Sequences: 5004
Number of extensions: 26368
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)