Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4h05
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 0.48
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 29 0.83
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 2.5
09_04_0031 + 13946692-13946774,13947007-13948012 27 3.4
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 27 4.4
09_04_0028 - 13928542-13929538,13929736-13929818 27 4.4
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 27 4.4
06_01_0277 - 2039129-2040280 27 5.9
11_01_0763 + 6402901-6403971,6404581-6404826 26 7.7
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938... 26 7.7
09_04_0430 + 17502387-17503505 26 7.7
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 26 7.7
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 0.48
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 208 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 324
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 29.5 bits (63), Expect = 0.83
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 310 HQPSAAAPFPCVPTQXFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYXFGVGG 146
H P AAA P VP++ P L + GG GL S S + G + G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 95 SLSLMIDSLLATYDREXPPDSKXVVNLTLHLRHANIRESESTVRILADLQMN 250
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 285 NGAAALGWCPRNACGGLTWYC*TR 356
NG AALGW R+ G L+ + TR
Sbjct: 4 NGTAALGWAARDTSGHLSPFSFTR 27
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 214 VHRADTGRSSNELDRQTTELERRGMG 291
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 285 NGAAALGWCPRNACGGLTWYC*TR 356
+G AALGW R+A G L+ + TR
Sbjct: 4 DGTAALGWAARDASGHLSPFSFTR 27
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 223 HGGLGLTNVSMSQMQGQVDYXFGVGGXLPI 134
+GG L ++Q G Y +G GG LP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>06_01_0277 - 2039129-2040280
Length = 383
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 356 PRLAVPRQASTSVPRTPAKCCSPIPLR 276
P A PR A+ R +K C P+P R
Sbjct: 148 PHAACPRNATLQQHRLLSKACEPLPRR 174
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 332 ASTSVPRTPAKCCSPIPLRSNSVVCRSNSFEDLPVSARWTR 210
AST +PR P+ P+P S + + + DLP +AR TR
Sbjct: 365 ASTDIPRRPSHGHIPLPF---SQLDFARTVADLPPTARPTR 402
>10_06_0175 -
11490280-11491000,11491869-11491947,11493613-11493811,
11494003-11494044
Length = 346
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 334 RPPQAFRGHQPSAAAPFPCVPTQXFV 257
+PPQ G P+ P+P PTQ V
Sbjct: 128 QPPQPSLGWSPNLNLPYPLPPTQPTV 153
>09_04_0430 + 17502387-17503505
Length = 372
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 97 TVPHDRLAPRNVRSGXSPRLQXRSQPDPAFETC*HS*VRVHRAD 228
+ P R+AP+ + +P ++ + P P F T S +H+ D
Sbjct: 201 STPPQRVAPQPPATAAAPPIEPVAPPSPTFWTVCMSCCHIHQYD 244
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = -2
Query: 337 VRPPQAFRGHQPSAAAPFPCVPTQXFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 170
++PP H + AP P +P+ P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,056
Number of Sequences: 37544
Number of extensions: 225446
Number of successful extensions: 690
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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