Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4g23
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 213 1e-56
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 213 1e-56
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 47 2e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 30 0.26
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 28 1.0
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 27 1.8
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 3.2
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.2
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 5.6
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.3
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 9.7
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.7
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 9.7
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 9.7
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 213 bits (520), Expect = 1e-56
Identities = 93/125 (74%), Positives = 114/125 (91%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
G ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++ATVK
Sbjct: 6 GAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVK 65
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECA
Sbjct: 66 KGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECA 125
Query: 362 DLWPR 376
DLWPR
Sbjct: 126 DLWPR 130
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 213 bits (520), Expect = 1e-56
Identities = 93/125 (74%), Positives = 114/125 (91%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
G ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++ATVK
Sbjct: 6 GAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVK 65
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECA
Sbjct: 66 KGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECA 125
Query: 362 DLWPR 376
DLWPR
Sbjct: 126 DLWPR 130
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 46.8 bits (106), Expect = 2e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Frame = +2
Query: 146 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 298
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 299 VNNKGEMKGSAITGPVAKE 355
VN + E G+ I VA E
Sbjct: 91 VNKECEPLGTRILSVVANE 109
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 29.9 bits (64), Expect = 0.26
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = -1
Query: 297 MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 118
+ ALSS+Y S L +T +T SS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 117 IPWTAITYRFFAPVLSAQLITAPTGRP 37
P +A A +++ LI +P P
Sbjct: 837 TPLSA-ALGSAAQSITSPLIMSPAAIP 862
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 27.9 bits (59), Expect = 1.0
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -1
Query: 375 RGHKSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTP--SRLLNGFRCLMTTAGITFF 202
+ K LAT E + T ++SSKY+ +P S+ +N L + + FF
Sbjct: 766 KSQKQKTELATFTTYKEDDTTTTTRTSIDSISSKYLESPVDSQKVNRTPNLQS---VPFF 822
Query: 201 RSSGLP--FLTVATIMSPEPAAGSLFRRPLIPWTAI 100
R P F+ ++PE GS + ++ W A+
Sbjct: 823 RQPDAPKRFVGTPDYLAPETLRGST-QDDMVDWWAL 857
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 375 RGHKSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 238
R HK AH+ AEP ++P++ + P+++ +TPS L F
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 179 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 289
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -3
Query: 298 YDTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSV 131
Y+TR + K + +E PLP LF E F C + + G QS+
Sbjct: 11 YNTRNMEKESSKDLVQNEDTPLPVQKISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 327 EPFISPLLLTMTPALSSKYINTPS 256
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -1
Query: 369 HKSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 217
+ + H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 164 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 295
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 286 IVLKVYKYSITPSERFPLPDDHCRHYLFPEFR 191
+V +++++ E FPLP LFP R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 85 CPCVVGAVDYCSHWETQGDTEFR 17
CPC + + SHW+ + D FR
Sbjct: 14 CPCFLSCCAFMSHWKLK-DFSFR 35
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +1
Query: 13 GSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGR 150
G+ Y PG P + + G E R R + P + A GR
Sbjct: 103 GNVCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYEQARGR 148
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 447 PSTSKSNPK-NDNLRNRHLQCKCAKLEYTF 533
P+T+ SN N +RNR +C+ L TF
Sbjct: 11 PTTATSNSSLNFFVRNREKSIRCSSLHQTF 40
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 13 GSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFWGH 162
G +P+ P PSGSS R + G+ RY+ + G GH
Sbjct: 421 GDGVPFSPSMPSGSS---RGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGH 467
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 526 YSSLAHLHCKCLLRKLSFFGFDFDVLGKESKTQ 428
Y L+ LHCK L+ FGF+ V K K +
Sbjct: 257 YLRLSLLHCKEALKTRFDFGFNVKVYEKLEKLE 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,334
Number of Sequences: 5004
Number of extensions: 48797
Number of successful extensions: 147
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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