Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4g23
(549 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 245 9e-65
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 244 1e-64
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 244 1e-64
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 244 1e-64
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 244 1e-64
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 244 1e-64
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 244 1e-64
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 244 1e-64
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 134 1e-31
AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1... 29 8.1
AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein pr... 29 8.1
AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein pr... 29 8.1
AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein. 29 8.1
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 245 bits (599), Expect = 9e-65
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 66
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 67 KGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 126
Query: 362 DLWPR 376
DLWPR
Sbjct: 127 DLWPR 131
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 244 bits (598), Expect = 1e-64
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 66
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 67 KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 126
Query: 362 DLWPR 376
DLWPR
Sbjct: 127 DLWPR 131
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 244 bits (598), Expect = 1e-64
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 66
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 67 KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 126
Query: 362 DLWPR 376
DLWPR
Sbjct: 127 DLWPR 131
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 244 bits (598), Expect = 1e-64
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 66
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 67 KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 126
Query: 362 DLWPR 376
DLWPR
Sbjct: 127 DLWPR 131
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 244 bits (598), Expect = 1e-64
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 66
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 67 KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 126
Query: 362 DLWPR 376
DLWPR
Sbjct: 127 DLWPR 131
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 244 bits (598), Expect = 1e-64
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 66
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 67 KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 126
Query: 362 DLWPR 376
DLWPR
Sbjct: 127 DLWPR 131
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 244 bits (598), Expect = 1e-64
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 1 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 60
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 61 KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 120
Query: 362 DLWPR 376
DLWPR
Sbjct: 121 DLWPR 125
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 244 bits (598), Expect = 1e-64
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 66
Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 67 KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 126
Query: 362 DLWPR 376
DLWPR
Sbjct: 127 DLWPR 131
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 134 bits (325), Expect = 1e-31
Identities = 62/69 (89%), Positives = 68/69 (98%)
Frame = +2
Query: 2 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 7 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 66
Query: 182 KGKPELRKK 208
KGKPELRKK
Sbjct: 67 KGKPELRKK 75
>AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1
protein.
Length = 1906
Score = 29.5 bits (63), Expect = 8.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 375 RGHKSAHSLATGPVMAEPFISPLLLTMTP 289
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1450 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1477
>AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein
protein.
Length = 568
Score = 29.5 bits (63), Expect = 8.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 375 RGHKSAHSLATGPVMAEPFISPLLLTMTP 289
+G AH L+ GP+ P++ P LL +TP
Sbjct: 112 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 139
>AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein
protein.
Length = 1285
Score = 29.5 bits (63), Expect = 8.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 375 RGHKSAHSLATGPVMAEPFISPLLLTMTP 289
+G AH L+ GP+ P++ P LL +TP
Sbjct: 829 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 856
>AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.
Length = 1644
Score = 29.5 bits (63), Expect = 8.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 375 RGHKSAHSLATGPVMAEPFISPLLLTMTP 289
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1454 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1481
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,449,402
Number of Sequences: 237096
Number of extensions: 1833008
Number of successful extensions: 4068
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4068
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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