Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g23
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   231   2e-61
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    34   0.077
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    34   0.077
AL032624-3|CAL36506.1|  232|Caenorhabditis elegans Hypothetical ...    32   0.24 
Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    28   3.9  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.9  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     27   8.9  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     27   8.9  
U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC024214-7|AAF36078.2|  189|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  231 bits (566), Expect = 2e-61
 Identities = 107/125 (85%), Positives = 117/125 (93%)
 Frame = +2

Query: 2   GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 181
           GG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VK
Sbjct: 7   GGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVK 66

Query: 182 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 361
           KGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 67  KGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 126

Query: 362 DLWPR 376
           DLWPR
Sbjct: 127 DLWPR 131


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 402 LEYTFKISSCVLLSFPSTSKSNPKNDNLRNRHL-QCKCAKLEYTFM 536
           LE  F +++      PSTS S+P N N R R L +C     +YT M
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 490


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 402 LEYTFKISSCVLLSFPSTSKSNPKNDNLRNRHL-QCKCAKLEYTFM 536
           LE  F +++      PSTS S+P N N R R L +C     +YT M
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 490


>AL032624-3|CAL36506.1|  232|Caenorhabditis elegans Hypothetical
           protein Y49A10A.2 protein.
          Length = 232

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 43  PSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFWGHDCGHS 177
           P G+   L R +R K+S  ++  +  +  ++T GG+ WG  CG +
Sbjct: 47  PQGAIFALHRDYRFKKST-EQHTKAIKEAKETLGGKLWGSQCGRA 90


>Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical
           protein F52B5.5b protein.
          Length = 197

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 414 FKISSCVLLSFPSTSKSNPKNDNLRNRHL-QCKCAKLEYTFM 536
           F +++      PSTS S+P N N R R L +C     +YT M
Sbjct: 2   FNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 43


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 433 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 302
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +2

Query: 35  LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 202
           L L  G V  C +D    KN  + +  G   + G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 203 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 286
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 301 DYDTRIVLKVYKYSITPSERFPL 233
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 144 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 52
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 34  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 129
           PG P G+ N       G    CD CP  + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298


>U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical
           protein F44A2.3 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 442 PFLVHQNQTRKMIICVIDIYNVNA 513
           PF + QN  RKMI  V+  Y++N+
Sbjct: 345 PFRIPQNNNRKMIEVVVSQYSLNS 368


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 25  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 129
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 25  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 129
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 25  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 129
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 25  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 129
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical
           protein F48E8.7a protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 256 TPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSVQATFDTLDS 104
           T  +  P  ++HC   +F +   ++F C +N  P+   R SV    + L S
Sbjct: 11  TLEDNGPSENEHCVETVFSDETISIFPC-YNLYPKKSLRLSVSGNSEKLKS 60


>AC024214-7|AAF36078.2|  189|Caenorhabditis elegans Hypothetical
           protein Y77E11A.8 protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 525 IQAWRIYIVNVYYANYHFSGLILMY*ERKVKRSY 424
           +  W+I     Y  N +F+GL++++  RK+ +S+
Sbjct: 117 LTGWKISYKMNYSCNGNFNGLLILHCIRKISKSF 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,920
Number of Sequences: 27780
Number of extensions: 281893
Number of successful extensions: 804
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)