Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4g19
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 36 0.008
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 33 0.054
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 32 0.072
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.51
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 29 0.88
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.5
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 27 2.0
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.0
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 2.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 2.7
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 27 3.6
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 4.7
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 26 4.7
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 25 8.2
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 8.2
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 8.2
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 35.5 bits (78), Expect = 0.008
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 195 EKRGDREVENLFKILEKIT-EIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYL 371
E+R RE E + LE+ E K + ER +K EK+ + L EE EK L
Sbjct: 643 EQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRIL 702
Query: 372 ETQKVCQKQIKSNQELRKRE 431
E +K +K K +E R+RE
Sbjct: 703 EERKRREKLDKEEEERRRRE 722
Score = 30.7 bits (66), Expect = 0.22
Identities = 21/100 (21%), Positives = 48/100 (48%)
Frame = +3
Query: 213 EVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQ 392
E EN K ++ +I++ E +R +K + +A L E+ + LE ++ +
Sbjct: 577 EEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEE 636
Query: 393 KQIKSNQELRKREWDKFIDDMNFKCQRIDNAFEEKEEELR 512
+ K ++ KRE +K ++ + + +E+E++L+
Sbjct: 637 ARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLK 676
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 32.7 bits (71), Expect = 0.054
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +3
Query: 261 DNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREW-- 434
+NE + S EKL +++ +E E+++ +K +S+QEL
Sbjct: 569 NNELSESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTI 628
Query: 435 DKFIDDMNFKCQ--RIDNA-FEEKEEELRDLYADLKHKL 542
K + D + K Q +++ A FE+KE L D DL+ KL
Sbjct: 629 TKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKL 667
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/102 (18%), Positives = 46/102 (45%)
Frame = +3
Query: 195 EKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLE 374
E+ ++ + + LEK+ + N++ + N+L + L++ L C E+D
Sbjct: 241 EQASNKSLRGEQERLEKLL-VSSNKTVSTLRQTENSLRAECKTLQEKLEKCAINEEDSKL 299
Query: 375 TQKVCQKQIKSNQELRKREWDKFIDDMNFKCQRIDNAFEEKE 500
+++ + + + DK I+D++ + DN E++
Sbjct: 300 LEELKHNVANYSDAIVHK--DKLIEDLSTRISEFDNLKSERD 339
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 32.3 bits (70), Expect = 0.072
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Frame = +3
Query: 207 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKV 386
+ E + K E+ + K+ E +RK S+KL + E +D + +
Sbjct: 497 NNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQD-SQKLRLLVEQLELERQDLKQAGEN 555
Query: 387 CQKQIKSNQELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IM 566
+ S+ E + + + + + +C +F+EK EL +LK KLN A+
Sbjct: 556 HYSNLSSDYETQIKSLESSLTNSQAECV----SFQEKINELNSQIDELKLKLNEANKKYQ 611
Query: 567 DLKGSLVDTNVR---IYPTNGF-LEYIK 638
+L S ++NV+ + P NG LE +K
Sbjct: 612 ELAISFENSNVKTQSVEPDNGLSLEALK 639
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.51
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Frame = +3
Query: 207 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKV 386
++ V++ ++ K E+ ++ S + N+ +K + + D QKV
Sbjct: 94 EKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKV 153
Query: 387 CQKQIKSNQELRKREWDKFIDDMNFKCQ-RIDN--AFEEKEEELRDLYADLKHKL 542
+K + E ++ W K+I + + + + RI N + E++E L A + K+
Sbjct: 154 LKKNKLNTLEQAQQNWSKYIKEQDIQDELRIANKDGYVERQEFLAKTRAAHEEKI 208
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 28.7 bits (61), Expect = 0.88
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 300 ALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMN 458
+LPVL ++LEQ+ E LEK + +K QEL+ + KF D +N
Sbjct: 72 SLPVLLDQLEQSE---ESLEKQVDVLRSSMEKDETRIQELKSMLYSKFHDQIN 121
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +3
Query: 306 PVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKRE 431
P L + +++ L L ++ + YLE KV ++ ++SN++ K++
Sbjct: 569 PNLFQHVDEKLRLEKKEQLSYLEILKVIEQMLESNEQKFKKQ 610
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/108 (19%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Frame = +3
Query: 207 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKV 386
++E E+L + +E++T ++ E R+ + S + Q + E+ +K+ + +++
Sbjct: 119 EKEKEDLQRKMEELT-VESMEVVRLTRQVETLSTQYSIQRSQWVREDEKKKKEIQDLKEL 177
Query: 387 CQKQIKS--NQELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLYA 524
+K N E + + + M+ + ++ E K+EE+R A
Sbjct: 178 YEKSEHGAKNWERERETFQNQVSQMSKQLDSLEKLCERKDEEIRSSQA 225
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 195 EKRGDREVENLFKILEKITEI 257
EK + E+EN+ KI EK+TE+
Sbjct: 779 EKEANHELENIEKIEEKLTEV 799
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.1 bits (57), Expect = 2.7
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = +3
Query: 207 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKV 386
+ ++E L + +++ DNE I+K+ L E LE+ L ++L ++ T+K+
Sbjct: 54 ESQLEELEEETKQLRLKADNED--IQKTEAEQLSRKVELLEEELETNDKLLRE--TTEKM 109
Query: 387 CQKQIKSNQ-ELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLN 545
Q +K+ E R + ++ DDM E+K EE+ D Y +K +L+
Sbjct: 110 RQTDVKAEHFERRVQSLERERDDM-----------EQKLEEMTDKYTKVKAELD 152
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.7
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Frame = +3
Query: 246 ITEIKDNESERIRKSGHNALPVLSEKLEQALN--LCEEL-EKDYLETQKVCQKQIKSNQE 416
++E ++++SE + + + E L +LN L +E E+D LET++ +Q +N E
Sbjct: 3969 VSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNE 4028
Query: 417 ---LRKREWDKFIDDMNFKCQRIDNAFEEKEEELRD 515
+ K + +K ++D D +E EEE+ D
Sbjct: 4029 SDLVSKEDDNKALEDK-------DRQEKEDEEEMSD 4057
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 207 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDY-LETQK 383
+REVENL K L+K ++ + E+E+ + E+ E++ ++L KD E
Sbjct: 144 EREVENLRKELDKYKDLVETEAEK-------RAAITKEECEKSWLEQQKLYKDMEQENAS 196
Query: 384 VCQKQIKSNQELRKREWD 437
QK +EL+ + D
Sbjct: 197 TIQKLTSKIRELQASQLD 214
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 285 KSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKS 407
KS +LP L E+ E+ +LEK++ E+ + ++ + S
Sbjct: 499 KSQQKSLPYLEEQYEKYRAKAADLEKEFSESTTLLKRDLSS 539
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 432 ILFFSILGYFLFASGKPFVFQDNLFPILHINSR 334
++F ++ Y L ASG+ ++F I H+N+R
Sbjct: 1258 LIFAGVIYYLLAASGQNYIFISMTNFISHLNNR 1290
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 276 RIRKSGHNA-LPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDD 452
R+RKS EKL + + EEL + + ++ QK++ E+ R WDK I+
Sbjct: 45 RLRKSSDQTEKKCWKEKLMKIRSELEELWEQSMMYEE--QKELTQLGEMLDRLWDKHINS 102
Query: 453 MNFKCQRI-DNAFEEKEEEL 509
K + I D A ++ +
Sbjct: 103 EGSKSETISDTAISGNDDTM 122
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 252 EIKDNESERIRKSGHNALPVLSEKLEQA 335
E + ES+RIR+ + +PV+ EK++++
Sbjct: 12 EKRKTESQRIREKYPDRIPVICEKVDKS 39
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 8.2
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Frame = +3
Query: 210 REVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVC 389
++V N+F+ILEK ++E+E+ P++ E + + K+ +K
Sbjct: 49 KKVVNVFEILEKENNAINSEAEKSVSEEEQDEPLVEG--ESPIVSTNKKAKN----KKKK 102
Query: 390 QKQIKSNQELRKREWDKFIDDMNFKCQRIDNA--FEEKEEELRDLYADLKHKLNIAD 554
+KQ K + KR+ D D N K + ++++ ++ +E+ A+LK K D
Sbjct: 103 KKQQKKKKVTGKRDLDNQSSD-NEKLEGLESSKNIDDDIDEIEKAAAELKLKYREQD 158
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 321 KLEQALNLCEE-LEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMNFKCQR 473
+LE L E+ L E + V ++ +E+ +RE +K + DM+ + QR
Sbjct: 310 QLENDLQFREQRLSARESELENVIASRLAQREEILRRELEKQLRDMDARYQR 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,761
Number of Sequences: 5004
Number of extensions: 53851
Number of successful extensions: 226
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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