Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g18
         (439 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22142-1|AAA28869.1|  131|Drosophila melanogaster protein ( D.me...   203   7e-53
BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p pro...   203   7e-53
AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal pr...   203   7e-53
AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB...   203   7e-53

>M22142-1|AAA28869.1|  131|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S17 gene, complete cds.
           ).
          Length = 131

 Score =  203 bits (496), Expect = 7e-53
 Identities = 98/118 (83%), Positives = 104/118 (88%)
 Frame = +2

Query: 32  KPSTKAANIIIEKYYXRLTLDFDTNXRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 211
           K   KAA +IIEKYY RLTLDF TN RICEE+AIIPTKPLRNKIAG+ THLM RLRHSQV
Sbjct: 7   KTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQV 66

Query: 212 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 385
           RGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI GLQLTQP T
Sbjct: 67  RGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT 124


>BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p
           protein.
          Length = 131

 Score =  203 bits (496), Expect = 7e-53
 Identities = 98/118 (83%), Positives = 104/118 (88%)
 Frame = +2

Query: 32  KPSTKAANIIIEKYYXRLTLDFDTNXRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 211
           K   KAA +IIEKYY RLTLDF TN RICEE+AIIPTKPLRNKIAG+ THLM RLRHSQV
Sbjct: 7   KTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQV 66

Query: 212 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 385
           RGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI GLQLTQP T
Sbjct: 67  RGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT 124


>AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal
           protein S17 protein.
          Length = 131

 Score =  203 bits (496), Expect = 7e-53
 Identities = 98/118 (83%), Positives = 104/118 (88%)
 Frame = +2

Query: 32  KPSTKAANIIIEKYYXRLTLDFDTNXRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 211
           K   KAA +IIEKYY RLTLDF TN RICEE+AIIPTKPLRNKIAG+ THLM RLRHSQV
Sbjct: 7   KTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQV 66

Query: 212 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 385
           RGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI GLQLTQP T
Sbjct: 67  RGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT 124


>AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB
           protein.
          Length = 131

 Score =  203 bits (496), Expect = 7e-53
 Identities = 98/118 (83%), Positives = 104/118 (88%)
 Frame = +2

Query: 32  KPSTKAANIIIEKYYXRLTLDFDTNXRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 211
           K   KAA +IIEKYY RLTLDF TN RICEE+AIIPTKPLRNKIAG+ THLM RLRHSQV
Sbjct: 7   KTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQV 66

Query: 212 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 385
           RGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI GLQLTQP T
Sbjct: 67  RGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT 124


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,133,067
Number of Sequences: 53049
Number of extensions: 313634
Number of successful extensions: 904
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)