Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g17
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.73 
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   1.7  
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    26   2.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    24   9.0  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    24   9.0  

>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 260 LDWLVTNKTSLRTLPNFSHSIRIKQSCSL*CRHFKI--IL*ADISNILRL 403
           L W    KT L+ +P   H     QSCS   R + +  IL   IS +L++
Sbjct: 54  LIWFYYQKTPLKWIPFLGHFFNTWQSCSFPPRRYLLAKILSGRISELLKV 103


>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 82  PNICQTGWSY*FCTAIKLSMTTSSVNYWKRLW 177
           PN  + GW+    T   L  T  S+ +W+ +W
Sbjct: 35  PNETKWGWNIRIATFRSLLNTIPSIPHWRTMW 66


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 396 NIFEISAHNIILKCLHYSEQLCL 328
           +IFE+  H +I KCL  S++ C+
Sbjct: 270 HIFELRYHIMIKKCLETSKRFCI 292


>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 277 KQNKPEDFTKLQSQYPDQTKLLTIVQTLQNYIVS*YFKYITFNKIFGNF 423
           K+  PED   LQ  +      LT+   + +     Y++Y  +N+  GNF
Sbjct: 26  KKGIPEDPCSLQYYFDQMAMCLTVFSQMNH-----YYRYGEYNRCKGNF 69


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 372 NIILKCLHYSEQLCLIR 322
           N ILKCLH ++  C +R
Sbjct: 53  NSILKCLHCNKWFCNVR 69


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 399 RNIFEISAHNIILKCLHYSE-QLCLIRIL*LKFGKVLRLVLFVTSQSN 259
           R    +SA   I  CL   + ++ LI +    +GKVL L+L V  Q+N
Sbjct: 590 RKYVVLSALRFIRSCLAARQSEMSLIMLETDTYGKVLDLMLKVKDQTN 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,840
Number of Sequences: 5004
Number of extensions: 30585
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)