Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g17
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine re...    31   0.28 
Z77135-3|CAB00878.1|  322|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L11247-6|AAA28005.2|  367|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homo...    28   2.6  
AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    27   6.0  
AL032626-5|CAA21525.1|  366|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    27   8.0  

>AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine
           receptor, class sx protein8 protein.
          Length = 296

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 306 FGKVLRLVLFVTSQSNFKSISYFFCIKNFGQFFCSQTLRSC 184
           FG +  + + +T+ S     SY  CI++F Q FC   L SC
Sbjct: 22  FGNIHLIYIILTTSSFRSKASYLQCIQSFAQVFC--ILNSC 60


>Z77135-3|CAB00878.1|  322|Caenorhabditis elegans Hypothetical
           protein T16A9.5 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 229 DTKEVRDGLKIGLASYKQNKPEDFTKLQSQYPDQT-KLLTIVQTLQNYI 372
           D ++  +GL+   A+ +Q+ P    +LQSQ   QT +L++ +Q  Q+ I
Sbjct: 64  DIQQAAEGLRQRAAALQQDGPGQLQQLQSQIQPQTQELISALQETQSPI 112


>L11247-6|AAA28005.2|  367|Caenorhabditis elegans Hypothetical
           protein F09G8.2 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 55  FPLLKFYSVPNICQTGWSY*FCTAIKLSMTTSSVNYWK 168
           FP +K +S PN  +      FC ++++   T    +WK
Sbjct: 131 FPPIKSFSYPNTAEKYGQSFFCASMEVQHLTELAEHWK 168


>AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homolog
           F09G8.2 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 55  FPLLKFYSVPNICQTGWSY*FCTAIKLSMTTSSVNYWK 168
           FP +K +S PN  +      FC ++++   T    +WK
Sbjct: 106 FPPIKSFSYPNTAEKYGQSFFCASMEVQHLTELAEHWK 143


>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 241 VRDGLKIGLASYKQNKPEDFTKLQSQYPDQTKLL 342
           V + L +G   +KQ K EDF KL+  +  +  L+
Sbjct: 189 VLEALPVGHYEWKQKKEEDFKKLEIDFEGKDLLI 222


>AL032626-5|CAA21525.1|  366|Caenorhabditis elegans Hypothetical
           protein Y37D8A.5 protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 229 DTKEVRDGLKIGLASYKQNKPEDFTKLQSQYPDQT-KLLTIVQTLQ 363
           D ++  +GL+    + +Q  P    +LQSQ   QT +LL+ +Q  Q
Sbjct: 108 DIQQAAEGLRQRATALQQEGPAQIQQLQSQIQPQTQELLSALQETQ 153


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 285 VLFVTSQSNFKSISYFFCIKNFGQFFCSQTL 193
           +L +  + N+K++ + +C   FG   C+QTL
Sbjct: 559 LLPIAIRRNYKNLPFDYCPDEFGTTSCTQTL 589


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical protein
            F57C7.4 protein.
          Length = 1484

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 261  NFKSISYFFCIKNFGQFFCSQTLRSCPAP*PLP 163
            N+K I+Y+  +      FCS  L S PAP PLP
Sbjct: 1158 NYKPINYYNIL------FCSVFLTSGPAPTPLP 1184


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/25 (40%), Positives = 21/25 (84%), Gaps = 2/25 (8%)
 Frame = +3

Query: 156 KLLEEA--MALDNFGESDYRRIDQN 224
           KL+E+A  M L+NF ++DY++++++
Sbjct: 448 KLIEKALEMLLENFDDTDYKKVERD 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,100,945
Number of Sequences: 27780
Number of extensions: 169471
Number of successful extensions: 371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)