Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4g16
(250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 29 0.068
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.090
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 0.27
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 0.63
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 0.84
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 1.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 3.4
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 24 3.4
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 23 4.5
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 23 4.5
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 23 5.9
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 23 5.9
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 23 7.8
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 23 7.8
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 23 7.8
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.068
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 79 NFEI-NVFGKSLLLSKFVNFCIANSDGVTI 165
NF++ +FGK + L + +N+C AN GV I
Sbjct: 179 NFKVAKLFGKHIRLEEHINYCKANKIGVGI 208
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.1 bits (62), Expect = 0.090
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 19 LLFKNNLNLMVACNLINTL-INFEINVFGKS-LLLSKFVN 132
LLFKN+L L+ AC +NT IN+ L+L +F N
Sbjct: 156 LLFKNSLVLLAACYFMNTTPSRLVINLIRSGYLILKRFAN 195
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.5 bits (58), Expect = 0.27
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 140 MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 3
++ LTN LS LP++LIS I +L KL ++ L ++T V
Sbjct: 385 LKSLTNSLSTMALPDSLISLHIELLRKLCSSENDFCSLLVEIITEV 430
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 0.63
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 37 LNLMVACNLINTLINFEINVFGKSLLLSKFVNF 135
+N+ V+ L+NTLI +I FG ++ + + + F
Sbjct: 183 VNICVSAKLVNTLIIEQIKFFGVNIGIGRAILF 215
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 0.84
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 149 LLAMQKLTNLLSNKLLPNTLISKLINVLIKLH 54
LLA Q T L+SNK L L +L L +H
Sbjct: 204 LLAEQAETELISNKRLSTKLPGRLQRALASIH 235
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 1.5
Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Frame = +1
Query: 76 INFEINVFGKSLLLSKF-VNFCIANSDGV--TIQHKMLTNVLSFLL 204
INFEI++ K+ L+KF V+ + +++ + +Q+K+ N++S +L
Sbjct: 775 INFEISILQKATNLTKFKVSSHMKHAEIMFSDVQYKVFINMMSNIL 820
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 3.4
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 ITFVSTLLFKNNLNLMVACNLINTLINFEINVFGK--SLLLSKFVNFCIANSDGVTIQHK 174
IT VST+L +LMV C L+ I +V GK S +L +F I+ T +H+
Sbjct: 2765 ITHVSTVLLPLIESLMVICRLV--FIELPEDV-GKHISPILERFKTLFIS----FTEEHR 2817
Query: 175 MLTNVLSF 198
+ N++ F
Sbjct: 2818 KIINMMVF 2825
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 23.8 bits (49), Expect = 3.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 149 LLAMQKLTNLLSNKLLPNTLI 87
L A L +L+ N +LPNTL+
Sbjct: 749 LAARDVLASLIGNVVLPNTLV 769
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 23.4 bits (48), Expect = 4.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 64 INTLINFEINVFG 102
IN +IN+EINV G
Sbjct: 288 INHIINYEINVLG 300
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 23.4 bits (48), Expect = 4.5
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 103 KSLLLSKFVNFCIANSDGVTIQHKMLTNVLSFLLEKYY 216
++L+++ F I +S + ++LTN + +KYY
Sbjct: 101 ETLIIAPFSKMSIDHSQKLQTSQQVLTNQIKSYEKKYY 138
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 23.0 bits (47), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 98 NTLISKLINVLIKLHATIKFKLFLK 24
N I +I + IKLH + LFLK
Sbjct: 137 NWTIISIIEIPIKLHFILNVLLFLK 161
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 23.0 bits (47), Expect = 5.9
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -1
Query: 205 PTKNLTRWLTFYVES*PRRC*QC-KN*QIYL 116
PT WL YV PR C N Q+Y+
Sbjct: 150 PTSLYETWLAAYVNDDPRHFIMCGNNLQLYV 180
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 22.6 bits (46), Expect = 7.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 127 VNFCIANSDGVTIQHKMLTNVLSFLLEK 210
+ C+A+ G + HK+L V+ L E+
Sbjct: 247 ITVCLADPPGSGLYHKVLHGVMFDLAER 274
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 22.6 bits (46), Expect = 7.8
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 58 NLINTLINFEINVFGKSLLLSKFVNFCIANSDGVTIQHKMLTNVLSF 198
NLINT+I++ +++F L + N + S + ++ +L F
Sbjct: 342 NLINTIIDYGMSLFHLFLFAAFIRNNSLYTSFNFITEKPVIVGLLLF 388
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 116 SNKLLPNTLISKLINVLIKLHATIKFKLFL 27
S+ +L LIS L++ + L AT KF+ ++
Sbjct: 460 SHAVLLTFLISALVHEFVMLLATGKFRCYI 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 916,255
Number of Sequences: 5004
Number of extensions: 14927
Number of successful extensions: 37
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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