Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g16
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    27   1.8  
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p...    26   3.1  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    26   3.1  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    26   3.1  
Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    26   4.1  
M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.     26   4.1  
AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut ...    26   4.1  
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    25   7.1  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    25   7.1  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    25   7.1  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    25   7.1  
U53336-1|AAA96174.1|  158|Caenorhabditis elegans Temporarily ass...    25   9.4  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF303253-1|AAG50211.1|  158|Caenorhabditis elegans tissue inhibi...    25   9.4  
AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 94  VFGKSLLLSKFVNFCIANSDGVTIQHKMLTNVL 192
           +FG++ L+SK++  CI+  D   I  K+ T ++
Sbjct: 15  IFGQNFLISKYLRTCISLLDPQLIDLKLQTRMV 47


>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 139 IANSDGVTIQHKMLTNVLSFLLEKY 213
           I NS+G  +Q++ LTN+    +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 139 IANSDGVTIQHKMLTNVLSFLLEKY 213
           I NS+G  +Q++ LTN+    +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178


>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 139 IANSDGVTIQHKMLTNVLSFLLEKY 213
           I NS+G  +Q++ LTN+    +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 139 IANSDGVTIQHKMLTNVLSFLLEKY 213
           I NS+G  +Q++ LTN+    +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
            protein 2 protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 85   EINVFGKSLLLSKFVNFCIANSDGVTIQH-KMLTNVLSF 198
            ++  +G   L++ F+N C A S  +  QH K +T +L +
Sbjct: 888  QVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHY 926


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
            protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 85   EINVFGKSLLLSKFVNFCIANSDGVTIQH-KMLTNVLSF 198
            ++  +G   L++ F+N C A S  +  QH K +T +L +
Sbjct: 888  QVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHY 926


>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 1   ITFVSTLLFKNNLNLMVACNLINTLINFEINVF 99
           I F   LLF     L   C LIN LI   ++ F
Sbjct: 631 IQFGYVLLFSPAFPLAAVCALINNLIEIRVDAF 663


>M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.
          Length = 562

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 127 VNFCIANSDGVTIQHKMLTNVLSF 198
           VNF    SDGV+I+H +    L+F
Sbjct: 511 VNFLNIRSDGVSIEHGLFQEPLAF 534


>AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut
           esterase protein 1 protein.
          Length = 562

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 127 VNFCIANSDGVTIQHKMLTNVLSF 198
           VNF    SDGV+I+H +    L+F
Sbjct: 511 VNFLNIRSDGVSIEHGLFQEPLAF 534


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 115 LSKFVNFCIANSDGVTIQHKMLTNVLSFLLEK 210
           L  F+N C    +G++ QHK     +  L+EK
Sbjct: 791 LELFLNRCCDPREGLSKQHKKFCKTILALIEK 822


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 19  LLFKNNLNLMVACNLINTLINFEINVFGKSLLL 117
           + ++NNL L +A N     +NF+ ++ G S  L
Sbjct: 682 IFYENNLFLEIAVNKFLKSVNFQTSLSGNSSYL 714


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 115 LSKFVNFCIANSDGVTIQHKMLTNVLSFLLEK 210
           L  F+N C    +G++ QHK     +  L+EK
Sbjct: 791 LELFLNRCCDPREGLSKQHKKFCKTILALIEK 822


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 19  LLFKNNLNLMVACNLINTLINFEINVFGKSLLL 117
           + ++NNL L +A N     +NF+ ++ G S  L
Sbjct: 699 IFYENNLFLEIAVNKFLKSVNFQTSLSGNSSYL 731


>U53336-1|AAA96174.1|  158|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 225 protein.
          Length = 158

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 191 NTLVNILC*IVTPSLLAMQKLTNLLSNKLLPNTLISKLINV 69
           N L  +LC  V P   +     N+L  K +P TL S++ ++
Sbjct: 116 NALYTVLCGQVLPDDRSQTSFENVLEWKNVPQTLQSQVKSI 156


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 247 FFY*TSLFIFNNIFPTKNLTRWLTFYV 167
           FF  T +     IFPT  LT W+ F++
Sbjct: 186 FFVGTFITTIPWIFPTHCLTYWIWFFI 212


>AF303253-1|AAG50211.1|  158|Caenorhabditis elegans tissue inhibitor
           of metalloproteinase2 protein.
          Length = 158

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 191 NTLVNILC*IVTPSLLAMQKLTNLLSNKLLPNTLISKLINV 69
           N L  +LC  V P   +     N+L  K +P TL S++ ++
Sbjct: 116 NALYTVLCGQVLPDDRSQTSFENVLEWKNVPQTLQSQVKSI 156


>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 92  LISKLINVLIKLHATIKFKLFLKSNVLTNV 3
           LI   +NV+I   AT+KF   L++ V  NV
Sbjct: 101 LIRDNVNVVIHSAATVKFDEHLRAAVTMNV 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,958,891
Number of Sequences: 27780
Number of extensions: 81313
Number of successful extensions: 204
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)