Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g16
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   0.76 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   1.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   2.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   2.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   5.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   5.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 0.76
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 85  EINVFGKSLLLSKFVNFCIANSDGVTI----QHKMLTNVLSFLLEKY 213
           ++N +  +  + KF+N+       +T      + M  N+L FL +KY
Sbjct: 305 KVNFYPNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKFLKQKY 351


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 145 NSDGVTIQHKMLTNVLSFLLEKYY*K*INLFSKKK 249
           +S  + I HKMLT + S  ++ Y    ++  SKKK
Sbjct: 242 HSSTLDIDHKMLTPIKSEPIDAYE---MHQISKKK 273


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -3

Query: 143 AMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKL 33
           A+ +   LL + +LP   +  ++N  ++  A + F+L
Sbjct: 76  AVNEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRL 112


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -3

Query: 143 AMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKL 33
           A+ +   LL + +LP   +  ++N  ++  A + F+L
Sbjct: 76  AVNEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRL 112


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 122 LLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVL 12
           L+S +      I K  N ++ +  T   K+F+K N+L
Sbjct: 82  LISQQKTSKLKIYKWNNQILHILWTSYKKVFMKDNIL 118


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 122 LLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVL 12
           L+S +      I K  N ++ +  T   K+F+K N+L
Sbjct: 65  LISQQKTSKLKIYKWNNQILHILWTSYKKVFMKDNIL 101


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 161 VTPSLLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 3
           +T  ++  +K      N +LP  LIS L  ++  L A    K+ L  ++L ++
Sbjct: 223 ITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSL 275


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 185 TC*VFCWKNI 214
           TC + CW NI
Sbjct: 104 TCVLSCWTNI 113


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 185 TC*VFCWKNI 214
           TC + CW NI
Sbjct: 157 TCVLSCWTNI 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,799
Number of Sequences: 438
Number of extensions: 952
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)