Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4g14
(264 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 24 1.9
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 24 1.9
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 24 1.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 24 1.9
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 24 1.9
U64846-9|AAG24117.3| 343|Caenorhabditis elegans Serpentine rece... 27 2.4
U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbona... 26 3.2
U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbona... 26 3.2
AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion transpo... 26 3.2
AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion transpo... 26 3.2
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z66567-4|CAA91493.2| 618|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z54270-2|CAA91026.2| 158|Caenorhabditis elegans Hypothetical pr... 25 7.4
U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 25 9.8
U64846-10|AAW88397.1| 341|Caenorhabditis elegans Serpentine rec... 25 9.8
U61958-1|AAB03183.1| 416|Caenorhabditis elegans Hypothetical pr... 25 9.8
AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical ... 25 9.8
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 81 CGCCCKNCAT 52
C CCC+ C T
Sbjct: 93 CCCCCRRCCT 102
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 75 CCCKNCATNNYP*C 34
CCC C T P C
Sbjct: 107 CCCTRCCTCCRPCC 120
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 81 CGCCCKNCAT 52
C CCC+ C T
Sbjct: 93 CCCCCRRCCT 102
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 75 CCCKNCATNNYP*C 34
CCC C T P C
Sbjct: 107 CCCTRCCTCCRPCC 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 81 CGCCCKNCAT 52
C CCC+ C T
Sbjct: 92 CCCCCRRCCT 101
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 75 CCCKNCATNNYP*C 34
CCC C T P C
Sbjct: 106 CCCTRCCTCCRPCC 119
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 81 CGCCCKNCAT 52
C CCC+ C T
Sbjct: 92 CCCCCRRCCT 101
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 75 CCCKNCATNNYP*C 34
CCC C T P C
Sbjct: 106 CCCTRCCTCCRPCC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 81 CGCCCKNCAT 52
C CCC+ C T
Sbjct: 91 CCCCCRRCCT 100
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 75 CCCKNCATNNYP*C 34
CCC C T P C
Sbjct: 105 CCCTRCCTCCRPCC 118
>U64846-9|AAG24117.3| 343|Caenorhabditis elegans Serpentine
receptor, class h protein193 protein.
Length = 343
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 170 FAHQLANIXDIFVNRFFNV 114
FA+ + +I IF NRFFN+
Sbjct: 108 FAYMVISIVSIFENRFFNI 126
>U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform b protein.
Length = 883
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 23 LPVLHYG*LFVAQFLQQQPQTSQADNV 103
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform a protein.
Length = 956
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 23 LPVLHYG*LFVAQFLQQQPQTSQADNV 103
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion
transporter ABTS-4b protein.
Length = 936
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 23 LPVLHYG*LFVAQFLQQQPQTSQADNV 103
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion
transporter ABTS-4a protein.
Length = 956
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 23 LPVLHYG*LFVAQFLQQQPQTSQADNV 103
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 87 EVCGCCCK-NCATNNYP*CSTGNITDAY 7
+ CG C +CAT N P C+ +T +
Sbjct: 365 QTCGSACPISCATRNQPRCNERCVTGCF 392
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 87 EVCGCCCK-NCATNNYP*CSTGNITDAY 7
+ CG C +CAT N P C+ +T +
Sbjct: 156 QTCGSACPISCATRNQPRCNERCVTGCF 183
>Z66567-4|CAA91493.2| 618|Caenorhabditis elegans Hypothetical
protein ZK455.4 protein.
Length = 618
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 156 CEHMXY-FRKPIF*CYHRVTLSA*EVCGCCCKNCATNNYP*CSTGNIT 16
C+++ Y F+ + R + E+CG NC ++ P NIT
Sbjct: 114 CKNIIYAFKDEVVFVLERSVFTPEEICGAFIANCGHSDKPLTHMWNIT 161
>Z54270-2|CAA91026.2| 158|Caenorhabditis elegans Hypothetical
protein F11C1.2 protein.
Length = 158
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 66 YNNNRKPLKPTTLHDGNIKKSVYENIXYVRKLM 164
+NNN+K PT+ N+ ++ YE + ++K M
Sbjct: 85 HNNNQKITIPTSFDSSNV-QNPYEEVKMMQKRM 116
>U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical
protein T19D12.9 protein.
Length = 462
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 24 CLCCTMDNYSLHNF 65
C+CCT NY+ NF
Sbjct: 31 CICCTNANYNAINF 44
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 194 IVLARHIFFAHQLANIXDIFVNRFFNVT 111
I+L +HIF A+QLA N F T
Sbjct: 249 IILQKHIFIANQLAEAIQKLKNIFVTGT 276
>U64846-10|AAW88397.1| 341|Caenorhabditis elegans Serpentine
receptor, class h protein194, isoform b protein.
Length = 341
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 176 IFFAHQLANIXDIFVNRFF 120
I FA+ + +I IF NRFF
Sbjct: 106 ILFAYMVISIVSIFENRFF 124
>U61958-1|AAB03183.1| 416|Caenorhabditis elegans Hypothetical
protein C25A8.5 protein.
Length = 416
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 51 SLHNFYNNNRKPLKPTTLHDGNIKKSVYE 137
SL N+Y N+++P+K T+ I K +E
Sbjct: 86 SLVNYYMNSKEPIKKMTVLKTPILKQPWE 114
>AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical
protein T11F1.6 protein.
Length = 431
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 6 HMHQ*YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENIXYVRKL 161
++H YCL + SL F+N + P K T ++ GN++ + + YV KL
Sbjct: 324 NIHANYCLDGVSFSESLCQFFNMSSLPEKCTYIY-GNVEINAGDE-EYVYKL 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,808,171
Number of Sequences: 27780
Number of extensions: 81188
Number of successful extensions: 238
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -