Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4g12
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 2.1
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 27 3.7
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.7
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 27 3.7
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 3.7
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 6.5
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 26 6.5
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 25 8.6
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 25 8.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.6
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 8.6
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 496 DGVSDIREYLVNNAKPGKF 552
DG+ IREYLVN+ +P F
Sbjct: 592 DGLIKIREYLVNDIEPSTF 610
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +1
Query: 367 TLVRNLTNGFIAGNPIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSD 510
T++ N ++ PT+P + +R S + S GDG +D
Sbjct: 45 TVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSSQEYKKSSGTRGDGAND 92
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 583 TPKSVIEDAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNED 702
TPK+ + + A L +LH++ Y ++ ++ EE+D+E+
Sbjct: 26 TPKAKVIKPIPATVLKYLHEDSIY-VEQPMNTVEEVDSEE 64
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 31 KICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQKKYNLPPSMLGSCHK 198
K N T ++ + ND + LDTPG++T K ++ L C K
Sbjct: 174 KSAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVK 229
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 265 LHKDVVEMLNSVQDMPSFLIINKVDKLRSK---KQLLTLVRNLTNGFIAGNPIPGPTNPN 435
L ++ + +++D F ++ +V L K QL L + +N GNP+P
Sbjct: 1175 LLNSLMTTITTLEDRWLFALLYRVGWLDHKFVADQLAVLYMS-SNALQTGNPLPQVVPSP 1233
Query: 436 KQERGFSHFSDVFMVSALN 492
+R F+ DVF+ LN
Sbjct: 1234 LVDRFFTTSGDVFLPPGLN 1252
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 6.5
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = +1
Query: 103 TQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIKESLHKDVV 282
T I +D PG+ TD ++ + + +C + + DVV V +A + + D +
Sbjct: 264 TDIALIDAPGLNTD------SMKTTSVFACQEEI---DVVVFVVNAENHFTLSAT--DFL 312
Query: 283 EMLNSVQDMPSFLIINKVDKLRSKKQLLTLV 375
S + F+I+NK D +R K++ L+
Sbjct: 313 RNA-STEKSHIFIIVNKFDNIRDKERCKRLI 342
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 271 KDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGNP 411
K ++MLN V S I+N V K+ S + + +L R +++ + P
Sbjct: 44 KTRMQMLNGVSRSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGP 90
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +1
Query: 328 NKVDKLRSKKQLLTLVRNLTNGFIAGNPIPGPTNPNKQERGFSHFSDVFMVSALNGDGVS 507
N + ++K++L + ++ L ++ P P + + E+G S+ + A+ S
Sbjct: 335 NSIISSQNKEELPSSIKYLEKTIMSDQATPHPFSKSLSEKGSSYHKSLTSDFAMKHYIKS 394
Query: 508 DIREYLVNN 534
IR L+N+
Sbjct: 395 TIRSMLLND 403
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 535 AKPGKFHYS-----TEEWTDQTPKSVIEDAVRAKFLDFL 636
AKP H S + W D+TP +E AVR+ +D L
Sbjct: 121 AKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGL 159
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -2
Query: 552 KLSGLGVVDKVLPYI*NSI--TIQSRYHKHIRKMTEASLLFIRI 427
KL +G+ D V P I ++ ++ SR++KH+ + + LLFI I
Sbjct: 530 KLLTVGICDTV-PDIRLTVLNSLDSRFNKHLAQADKIRLLFIAI 572
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +1
Query: 499 GVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIP 651
GVS I + N+ KP W + +I D R +D + +P
Sbjct: 529 GVSQIVAIISNDVKPALTSLFQPNWYQSSNMKLIVDTFRDYIVDCIEHMVP 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,695
Number of Sequences: 5004
Number of extensions: 61600
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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