Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4g12
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 74 1e-13
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 68 7e-12
05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878... 29 3.9
03_06_0674 - 35449373-35449465,35449959-35450112,35450763-354508... 29 5.1
05_02_0117 - 6779121-6779582 28 6.8
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 28 9.0
06_03_0719 - 23845879-23845881,23846197-23846253,23846786-238470... 28 9.0
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 28 9.0
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 74.1 bits (174), Expect = 1e-13
Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 2/248 (0%)
Frame = +1
Query: 4 TLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQKKYNLPPSML 183
TLIN+I+ +K+ ++K TT + +C + QI+ DTPGV+ +++ + L M+
Sbjct: 140 TLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTPGVI---KKEMHKLDTMMM 196
Query: 184 GSCHKSLRCADVVGVVHDASCKYIKESLHKDVVEML-NSVQDMPSFLIINKVDKLRSKKQ 360
+ ++ AD V VV DA CK + E + + + E + N ++P L++NK D ++
Sbjct: 197 KNVRSAVGSADCVLVVVDA-CK-MPEKIDEILEEGVGNKDTELPVLLVLNKKDLIKP--- 251
Query: 361 LLTLVRNLTNGFIAGNPIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSDIREYLVNNAK 540
G IA + + F++ DV +SA G GV DI+E++++
Sbjct: 252 ----------GEIA--------KKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLP 293
Query: 541 PGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVK-LDYYEEIDNEDKIICS 717
G +Y + ++ + + + VR K QEIPY +V + Y +D I
Sbjct: 294 LGPAYYPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVE 353
Query: 718 VSVECPSE 741
+ VE S+
Sbjct: 354 ILVEKESQ 361
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 68.1 bits (159), Expect = 7e-12
Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 5/218 (2%)
Frame = +1
Query: 4 TLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQKKYNLPPSML 183
+L N ++ K+ A S K +TTT + + TQI F DTPG++ + +
Sbjct: 163 SLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFDTPGLMLGHHGLPHRDVTVRV 222
Query: 184 GSCHKSLRCADVVGVVHDASCKYIKESLHKDVVEMLNSV-----QDMPSFLIINKVDKLR 348
S S+ D++ V+ D + +++K + VV+++ + + L +NKVD +
Sbjct: 223 ESAWSSINLYDLLIVLFDVN-RHLK-TPDTRVVKLIKRLGAEVNPNQKRILCMNKVDLVE 280
Query: 349 SKKQLLTLVRNLTNGFIAGNPIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSDIREYLV 528
KK LL + + + +P ER F FMVS L G GV D+ ++L+
Sbjct: 281 DKKDLLKVAKEFED-------LPA------YER-FPLVCRYFMVSGLKGKGVKDLVQFLM 326
Query: 529 NNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQ 642
A + T++ K++ + VR K LD +HQ
Sbjct: 327 EQAVRRPWDEEPTTMTEEVMKTISLEVVREKMLDHIHQ 364
>05_03_0131 +
8779006-8779073,8779517-8779662,8779739-8780794,
8781070-8781232,8781423-8781494,8782076-8782147,
8782643-8782815,8782958-8783163,8783277-8783403,
8783793-8783864,8783984-8784176,8784298-8784768,
8785635-8785740
Length = 974
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 479 TINTSEK*LKPLSCLLGFVGPGIGFPAI-NPLVRFLTKVNNCFFDLNLSTLFMIRKLGIS 303
TIN +EK L C+ ++ G G AI +P++R D NLS++ M+ +L +
Sbjct: 815 TINGTEKNLA--QCVRDWLSSGRGIEAIADPMIRD---------DCNLSSVEMVAQLALD 863
Query: 302 CTE 294
CTE
Sbjct: 864 CTE 866
>03_06_0674 -
35449373-35449465,35449959-35450112,35450763-35450860,
35450947-35451234,35451313-35451503,35451789-35452006,
35452314-35452653,35452726-35453167
Length = 607
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 589 SAFGQSILQLNNETFRAWRC*QGTPLY 509
S+FG IL++ NET WR + LY
Sbjct: 485 SSFGHGILEVKNETHALWRWHRNQDLY 511
>05_02_0117 - 6779121-6779582
Length = 153
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 523 LVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLK--VKLDYYE 684
L+ P K +EEW ++ KSVI+ A K D +E ++ V+ YYE
Sbjct: 61 LLRTNNPVKVDGLSEEWVEKNSKSVIKTANLLKKADDSFEEFQKQVRKEVEKGYYE 116
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 604 DAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNEDKIICS 717
DAV FL L Q LK KL++ +IDNE + + S
Sbjct: 52 DAVLPAFLQVLFQNAMELLKKKLEFACDIDNEGQKLMS 89
>06_03_0719 -
23845879-23845881,23846197-23846253,23846786-23847011,
23847118-23847245,23847339-23847444,23847543-23847622,
23847773-23847870,23848015-23848128,23848239-23848379,
23849012-23849096,23849789-23850016
Length = 421
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 493 GDGVSDIREYLVNNAKPGKF-HYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVK 669
GDG D+ +N F ++ +TD KS+ D A+F EIP K
Sbjct: 261 GDGPWDMMHQFDDNIPARSFDNFQFVNFTDIMSKSIAADRKEAEFALSALMEIPTQYKAT 320
Query: 670 LD 675
LD
Sbjct: 321 LD 322
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 334 VDKLRSKKQLLTLVRNLTNGFIAGNPIPGPTNPNKQERGFSH----FSDVFMVSAL---N 492
V + S Q++T ++ L G+I GNPI G + + +SH SD +A+ N
Sbjct: 156 VGDISSSLQVVTFLKKL-QGYIVGNPITGSKIDDNFKIPYSHGVGIISDQLYEAAVANCN 214
Query: 493 GDGVSDIRE 519
GD V+ E
Sbjct: 215 GDYVTTTNE 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,710
Number of Sequences: 37544
Number of extensions: 342043
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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