Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g12
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.0  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 220 VGVVHDASCKYIKESLHKDVVEM 288
           V V HD SC Y+   + K   +M
Sbjct: 91  VVVTHDGSCLYVPPGIFKSTCKM 113


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 220 VGVVHDASCKYIKESLHKDVVEM 288
           V V HD SC Y+   + K   +M
Sbjct: 91  VVVTHDGSCLYVPPGIFKSTCKM 113


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 397  IAGNPIPGPTNPNKQERGFSHFSD 468
            ++G+P P P  P   ++  S F+D
Sbjct: 1853 VSGSPEPPPPPPRNHDQNNSSFND 1876


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 706 FYLRYRSLRNNLISLSNCMVFLDAKNLR-ISLSQRLL*PISA 584
           F+L+   LRNN I       FL   NL  + LS   L  + A
Sbjct: 359 FFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGA 400


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 220 VGVVHDASCKYIKESLHKDVVEM 288
           V V HD SC Y+   + K   ++
Sbjct: 91  VVVTHDGSCLYVPPGIFKSTCKI 113


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 220 VGVVHDASCKYIKESLHKDVVEM 288
           V V HD SC Y+   + K   ++
Sbjct: 91  VVVTHDGSCLYVPPGIFKSTCKI 113


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 538 KPGKFHYSTEEWTDQTPKS 594
           K G + Y + EW   TP++
Sbjct: 125 KTGSYDYPSPEWDTVTPEA 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,094
Number of Sequences: 438
Number of extensions: 4860
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)