Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g09
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    29   0.94 
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.0  
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.6  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.6  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.6  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   8.8  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 339 NI*SRAKNFKRYTHILFYLRDYLYRVYFAGSSYLFQSECG 220
           N+     N+K Y + L  + D+   ++    ++L QS CG
Sbjct: 244 NVIKTIDNWKNYPNALIQISDFELSIFVDSKNHLVQSSCG 283


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 394 LRMHRPLYFLSCDLYESCHNRFVFFSIDIHIMYIYMLYV 510
           LRMH P Y LS D + +  N F   +  I I  + + +V
Sbjct: 131 LRMHVPFYTLSFDTFSTHTNFFPRHTFPIFIARVSLHFV 169


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 150 LLLSVEIGRYSICEYVSLNAYW-ATCVVFIMSDP 52
           LL+  EIG  S  +Y  L+AY+   C + ++S P
Sbjct: 23  LLIITEIGFSSCIQYSGLSAYFPIKCTLSLLSSP 56


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 347 FYPTFDHELRTSNDILIFYFTCVIICTGYILREVAICFSRSV 222
           FY  FD  L   N ++ +    +++   Y++  + + FS S+
Sbjct: 94  FYNYFDQALADLNSVVKYVIETIVLIFTYVMTVIIVYFSFSL 135


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 347 FYPTFDHELRTSNDILIFYFTCVIICTGYILREVAICFSRSV 222
           FY  FD  L   N ++ +    +++   Y++  + + FS S+
Sbjct: 94  FYNYFDQALADLNSVVKYVIETIVLIFTYVMTVIIVYFSFSL 135


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 192 NLNGIA*FFTHTPTETNSYFPQNIPCTNNHASKIKY 299
           +L   + F TH  T  N YFP N P      SK +Y
Sbjct: 161 SLKNFSRFDTHDSTN-NPYFPDNPPSPKADISKDEY 195


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 446 AIIGSCSFPLTYILCTFICYMCVC 517
           A I S  +   Y++   ICY+C+C
Sbjct: 44  ASIESGDYTFHYLIDNGICYLCIC 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,866
Number of Sequences: 5004
Number of extensions: 68759
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)